| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ydaN [H]
Identifier: 170755305
GI number: 170755305
Start: 1430286
End: 1432382
Strand: Direct
Name: ydaN [H]
Synonym: CLD_3269
Alternate gene names: 170755305
Gene position: 1430286-1432382 (Clockwise)
Preceding gene: 170756797
Following gene: 170756354
Centisome position: 36.13
GC content: 25.61
Gene sequence:
>2097_bases ATGAAGAAGAATTTAAGAATAATAATAATTATTATAATGGTTTTCCTAGGAAATATTATAAGTGGACAAAATGTAGTGGC GGCTCCAAATAAATCTAAAAATTTTAGAGTAGAAAAAGATATGAAGATAGAGGGGGTATTTGGAAATAATGTATTTTTCT TTAACATAGATAAAAGTTGGACAGTAGATAATGCCTATTTAAACTTAATTTTTACAGAGAGTGATCTTTTAGATAAAACT CAATCTACATTAACAGCTTATATAAATGATTTCCCAGTATATTCTATGAAGATCGGAGATAAAAAGAAATATAAAGAATC CATAAAAATTAATATACCAAAGGATAAATTGATATCTGGGTATAATGAAGTTAAAATTAAAGTTTATAGTAGAATATCAG AAAAACCCTGTATAGATGATGTAAATAGTGGGAATTGGTTTATAATTCACAAAGGTTCTTATGTTCATATGGATTTTAAG GATAGAGAAGATACAAAAACTCTTAAAGAATTTCCTTTCCCCTATTTAAAAGCCAGTGACGAAAATCCAGCTAACAGTAT GATTATGCTTCCGGATAATTTTTCGCAGGGAGAAATCACATCTACTATGATGCTTTGTTCTAATTTTGGATCAAAAAGAA AATCTGATAATGTAAATATGAAAGTTTATAAAGCTTCAGAGGCTAATTTAAAAAACAAATTAGATATAATTTTTATAGGA AGTAAAAATAATACTCCCCTAGATTTGTTAACTTTACTGTCCAAAGAAGAGATAAATAGGCTAGATAAAGATGCTATTGT TAAAGAGGTTATTTCACCCTATAATCCTAGTAAAAAGCTATTGCTTTTAATATCTAATAATGAAAAGAATATGATAAAGG CTTCAAAATTATTATGTAGTAAAGACTATATGAAGCAAATAGATAAAGACACTATAATAGTTAATAATAGTATGGATGTA GAAGATATAAAAGAAGAAAAAGCGAATAGAGTATCATTGTCAGATTTAGGATATGGCAATGTAAGTTTAAAAGGACCTTT TAAACAGGAGGCAACCTTTAATTTGAATATTCCCAAAGATAGATTTATAAAAGAGGGATCAAAGGTAGTTATAAATAATA GATATTCTAAAAATATAGATTTTGATAGATCTCTTATAACGGTTTATATAAATGATACTCCAATAGGTAGTAAAAAATTA GACAGCAAAACAGCGGATAATGATAGCTTTGAAATAAGTATTCCAAAAGATATTAGAAATAGTAGCAATTATGAAATAAA GGTAGTGTTTAATTTAGAAATTAAAGATTTATTTTGTACTTTTAGAGAGGGCGAAAATCCTTGGGCTTATATATTAAATA ATTCTTACATTTATACCCCTTATAAAGAGGGTAGGGATAATGTATTTGAAAATTATCCTAATCCATTTATATCTAATGGA GGTATGAATGATTTGACATTAGTACTTTCAGATAATACTACTTCTGAAGAACTTAATTTTGCAGGAAATATAATGGCTAC CATAGGGCATGATGTAGATATCAATAGGGGTAAATTTAATGCAGTAGCAGCAAAGGATTTATCATCTAAACTTAAGAAGG GTAATTTAATAATCATAGGAACACCAGAGAGCAATTCTATTATAAAAAATTTAAATAAAAATTTATATATTAAATTTAAC AAGAATTTTAATGGATTTCTATCCAATGAGAAAATGAAATTTTTTCAGGATTATAGTAGCAAGTTAGCCTCTATTCAACT TATAGACTCTCCTTATAATAAAGAGAACAAAGCAATGATAGTAACATCAACTTATACTAGAGATTTAGCTTTAGCACAAA AATATTTAAGTGATATATCTTTAGTAAAAAGTCTTAAAGGAAATGCTGTAACTATAGATAGAGATGGTTTAATGAATTAT TCATATTTTGGAGATAAATATGATAAAGAAAAAGAAGAAAATGGTAATATCAGTAAATTTAAAAATATAACTTTAAATTC TAATATAAAAAACTTACTAATATTTTTTGTGTTTATAATGGTTATTTTAGTTGTAGGTTCTTTATTATTTATAAAAAAAT ATAAAAAAAATAGTTAG
Upstream 100 bases:
>100_bases AACTTAAGCAGATGAATCCTGTGGTACTACCGTCTTATAAGTTGGAAAAATGAAAAATCATAGCTGCTATTTGTTATGAT TTTAGAAATCAGGAGTTAAT
Downstream 100 bases:
>100_bases GATATATTATTACTAGTACAATAATTAAAATAACTTAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCACT AAAGCTTATTAACAGACTTC
Product: cellulose synthase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MKKNLRIIIIIIMVFLGNIISGQNVVAAPNKSKNFRVEKDMKIEGVFGNNVFFFNIDKSWTVDNAYLNLIFTESDLLDKT QSTLTAYINDFPVYSMKIGDKKKYKESIKINIPKDKLISGYNEVKIKVYSRISEKPCIDDVNSGNWFIIHKGSYVHMDFK DREDTKTLKEFPFPYLKASDENPANSMIMLPDNFSQGEITSTMMLCSNFGSKRKSDNVNMKVYKASEANLKNKLDIIFIG SKNNTPLDLLTLLSKEEINRLDKDAIVKEVISPYNPSKKLLLLISNNEKNMIKASKLLCSKDYMKQIDKDTIIVNNSMDV EDIKEEKANRVSLSDLGYGNVSLKGPFKQEATFNLNIPKDRFIKEGSKVVINNRYSKNIDFDRSLITVYINDTPIGSKKL DSKTADNDSFEISIPKDIRNSSNYEIKVVFNLEIKDLFCTFREGENPWAYILNNSYIYTPYKEGRDNVFENYPNPFISNG GMNDLTLVLSDNTTSEELNFAGNIMATIGHDVDINRGKFNAVAAKDLSSKLKKGNLIIIGTPESNSIIKNLNKNLYIKFN KNFNGFLSNEKMKFFQDYSSKLASIQLIDSPYNKENKAMIVTSTYTRDLALAQKYLSDISLVKSLKGNAVTIDRDGLMNY SYFGDKYDKEKEENGNISKFKNITLNSNIKNLLIFFVFIMVILVVGSLLFIKKYKKNS
Sequences:
>Translated_698_residues MKKNLRIIIIIIMVFLGNIISGQNVVAAPNKSKNFRVEKDMKIEGVFGNNVFFFNIDKSWTVDNAYLNLIFTESDLLDKT QSTLTAYINDFPVYSMKIGDKKKYKESIKINIPKDKLISGYNEVKIKVYSRISEKPCIDDVNSGNWFIIHKGSYVHMDFK DREDTKTLKEFPFPYLKASDENPANSMIMLPDNFSQGEITSTMMLCSNFGSKRKSDNVNMKVYKASEANLKNKLDIIFIG SKNNTPLDLLTLLSKEEINRLDKDAIVKEVISPYNPSKKLLLLISNNEKNMIKASKLLCSKDYMKQIDKDTIIVNNSMDV EDIKEEKANRVSLSDLGYGNVSLKGPFKQEATFNLNIPKDRFIKEGSKVVINNRYSKNIDFDRSLITVYINDTPIGSKKL DSKTADNDSFEISIPKDIRNSSNYEIKVVFNLEIKDLFCTFREGENPWAYILNNSYIYTPYKEGRDNVFENYPNPFISNG GMNDLTLVLSDNTTSEELNFAGNIMATIGHDVDINRGKFNAVAAKDLSSKLKKGNLIIIGTPESNSIIKNLNKNLYIKFN KNFNGFLSNEKMKFFQDYSSKLASIQLIDSPYNKENKAMIVTSTYTRDLALAQKYLSDISLVKSLKGNAVTIDRDGLMNY SYFGDKYDKEKEENGNISKFKNITLNSNIKNLLIFFVFIMVILVVGSLLFIKKYKKNS >Mature_698_residues MKKNLRIIIIIIMVFLGNIISGQNVVAAPNKSKNFRVEKDMKIEGVFGNNVFFFNIDKSWTVDNAYLNLIFTESDLLDKT QSTLTAYINDFPVYSMKIGDKKKYKESIKINIPKDKLISGYNEVKIKVYSRISEKPCIDDVNSGNWFIIHKGSYVHMDFK DREDTKTLKEFPFPYLKASDENPANSMIMLPDNFSQGEITSTMMLCSNFGSKRKSDNVNMKVYKASEANLKNKLDIIFIG SKNNTPLDLLTLLSKEEINRLDKDAIVKEVISPYNPSKKLLLLISNNEKNMIKASKLLCSKDYMKQIDKDTIIVNNSMDV EDIKEEKANRVSLSDLGYGNVSLKGPFKQEATFNLNIPKDRFIKEGSKVVINNRYSKNIDFDRSLITVYINDTPIGSKKL DSKTADNDSFEISIPKDIRNSSNYEIKVVFNLEIKDLFCTFREGENPWAYILNNSYIYTPYKEGRDNVFENYPNPFISNG GMNDLTLVLSDNTTSEELNFAGNIMATIGHDVDINRGKFNAVAAKDLSSKLKKGNLIIIGTPESNSIIKNLNKNLYIKFN KNFNGFLSNEKMKFFQDYSSKLASIQLIDSPYNKENKAMIVTSTYTRDLALAQKYLSDISLVKSLKGNAVTIDRDGLMNY SYFGDKYDKEKEENGNISKFKNITLNSNIKNLLIFFVFIMVILVVGSLLFIKKYKKNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789952, Length=394, Percent_Identity=24.8730964467005, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018513 [H]
Pfam domain/function: PF03170 BcsB [H]
EC number: NA
Molecular weight: Translated: 79590; Mature: 79590
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNLRIIIIIIMVFLGNIISGQNVVAAPNKSKNFRVEKDMKIEGVFGNNVFFFNIDKSW CCCCCEEHHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCEEEEEECCCEEEEECCCCE TVDNAYLNLIFTESDLLDKTQSTLTAYINDFPVYSMKIGDKKKYKESIKINIPKDKLISG EECCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCEEEECCHHHHHCC YNEVKIKVYSRISEKPCIDDVNSGNWFIIHKGSYVHMDFKDREDTKTLKEFPFPYLKASD CCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHCCCCEEECCC ENPANSMIMLPDNFSQGEITSTMMLCSNFGSKRKSDNVNMKVYKASEANLKNKLDIIFIG CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE SKNNTPLDLLTLLSKEEINRLDKDAIVKEVISPYNPSKKLLLLISNNEKNMIKASKLLCS CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHC KDYMKQIDKDTIIVNNSMDVEDIKEEKANRVSLSDLGYGNVSLKGPFKQEATFNLNIPKD HHHHHHCCCCEEEEECCCCHHHHHHHHCCEEEEHHCCCCCEEECCCCCCCCEEEECCCHH RFIKEGSKVVINNRYSKNIDFDRSLITVYINDTPIGSKKLDSKTADNDSFEISIPKDIRN HHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCC SSNYEIKVVFNLEIKDLFCTFREGENPWAYILNNSYIYTPYKEGRDNVFENYPNPFISNG CCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCEEECCCCCCCCHHHHCCCCCCCCCC GMNDLTLVLSDNTTSEELNFAGNIMATIGHDVDINRGKFNAVAAKDLSSKLKKGNLIIIG CCCEEEEEEECCCCCCHHCCCCCEEEEECCCEECCCCCEEEEHHHHHHHHHCCCCEEEEE TPESNSIIKNLNKNLYIKFNKNFNGFLSNEKMKFFQDYSSKLASIQLIDSPYNKENKAMI CCCCCHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCEEE VTSTYTRDLALAQKYLSDISLVKSLKGNAVTIDRDGLMNYSYFGDKYDKEKEENGNISKF EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCCHHCCCCHHHE KNITLNSNIKNLLIFFVFIMVILVVGSLLFIKKYKKNS EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKNLRIIIIIIMVFLGNIISGQNVVAAPNKSKNFRVEKDMKIEGVFGNNVFFFNIDKSW CCCCCEEHHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCEEEEEECCCEEEEECCCCE TVDNAYLNLIFTESDLLDKTQSTLTAYINDFPVYSMKIGDKKKYKESIKINIPKDKLISG EECCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCEEEECCHHHHHCC YNEVKIKVYSRISEKPCIDDVNSGNWFIIHKGSYVHMDFKDREDTKTLKEFPFPYLKASD CCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHCCCCEEECCC ENPANSMIMLPDNFSQGEITSTMMLCSNFGSKRKSDNVNMKVYKASEANLKNKLDIIFIG CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE SKNNTPLDLLTLLSKEEINRLDKDAIVKEVISPYNPSKKLLLLISNNEKNMIKASKLLCS CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHC KDYMKQIDKDTIIVNNSMDVEDIKEEKANRVSLSDLGYGNVSLKGPFKQEATFNLNIPKD HHHHHHCCCCEEEEECCCCHHHHHHHHCCEEEEHHCCCCCEEECCCCCCCCEEEECCCHH RFIKEGSKVVINNRYSKNIDFDRSLITVYINDTPIGSKKLDSKTADNDSFEISIPKDIRN HHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCC SSNYEIKVVFNLEIKDLFCTFREGENPWAYILNNSYIYTPYKEGRDNVFENYPNPFISNG CCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCEEECCCCCCCCHHHHCCCCCCCCCC GMNDLTLVLSDNTTSEELNFAGNIMATIGHDVDINRGKFNAVAAKDLSSKLKKGNLIIIG CCCEEEEEEECCCCCCHHCCCCCEEEEECCCEECCCCCEEEEHHHHHHHHHCCCCEEEEE TPESNSIIKNLNKNLYIKFNKNFNGFLSNEKMKFFQDYSSKLASIQLIDSPYNKENKAMI CCCCCHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCEEE VTSTYTRDLALAQKYLSDISLVKSLKGNAVTIDRDGLMNYSYFGDKYDKEKEENGNISKF EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCCHHCCCCHHHE KNITLNSNIKNLLIFFVFIMVILVVGSLLFIKKYKKNS EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]