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The map label for this gene is ygeV [H]

Identifier: 170755236

GI number: 170755236

Start: 3131939

End: 3133702

Strand: Reverse

Name: ygeV [H]

Synonym: CLD_1653

Alternate gene names: 170755236

Gene position: 3133702-3131939 (Counterclockwise)

Preceding gene: 170755560

Following gene: 170756788

Centisome position: 79.17

GC content: 29.88

Gene sequence:

>1764_bases
ATGAAGGGTTCTACATTATTAGAAATTCAAGATACAGTTGCTAAGTATGCAAATATAATTTCAAGTGTAATAAAAGTGGA
TGTTGAAATTGTGGATAAAAATTTGTGTAGAATAGCAGGGACTGGTATTTATAAAGATGCAATAAACAAAGATATATCAA
AAGAAGGATACGTATACGATTATGTTATAAAAACTGGAGAGAAGCAGATAATAAAGAATCCAGGACAACATTATCTGTGT
AAAAAATGTAATCATAGAAATAATTGCCTAGAGAAAATGCTTGTGTGTACGCCTATAATATTAAATGATGATATTATAGG
GGTAATAGGACTTGTGTGTTCAAAGGATAGTCAAAGAAATCATTTTATAGAAAACTTTGATTCATTTATTCAAATGCTAT
ATCAAATATCGGATTTTATAAGCACTAAATCATATGAACACATCGAAATTGAAAGAAGTCATATGATGGTAGATTTGTTA
AATCAAATAATAGATAGTGTAGATAAAGGGGTTCTAGTTACTAAAAACAATGAAATAGTTCATATGAACACAAGTGCTAT
GAAGCAACTTAAGCTGAAAGCTAATAATACGAATAAAAAGATAACAATATCTTCTACTAGTGAATATATAATGGGAGGCG
AAGTATATACTATTGTCATAGATAATGAAAAGTTTCAACTTATGGGTAGGATTATACCTGTTTTCCCAGTATTATCAGAC
TATGATACAATATTTGTGTTTGAGGAAATAAAGCACTTAAAATCCAAAATATCCAAAGTTAGTGGAGGAAGAGAAGTTAT
AAAGGTTGAGGATATTATCGGTCAGTCACAAGCTATGGTTCAACTTAAAAATAGGATTAAAAAGATTGCTTCCTCAAGTT
CTACAGTTCTCATAACTGGAGAAAGTGGCACTGGGAAGGAAGTGATCGCGCGTGCCATACATTGTGAAAGTGATAAAAAT
ACTAATCCTTTTATAGCTATAAACTGTGGAGCTATACCAGATGCTCTTTTAGAAAGTGAATTATTTGGATACGTAAGAGG
TGCTTTTAGTGGAGCAGATCCAAATGGAAGAGTAGGTAAATTTGAATTAGCAAACAATGGAATAATATTTTTAGACGAAA
TAGGAGACATGCCTTTATATCTGCAGGTTAAAATACTAAGGGTACTCCAGGAAAGAAAATTAGTAAGAATAGGATCTAAT
CATCTTATAGATTTAGATATAAGAGTTATAGCGGCTACTAACAAGGATTTAAAAAAATTAATAAAAGAAAATAAATTTAG
GGAAGATCTATATTATAGACTAAATGTTATTCCATTAAAAATACCACCTTTAAGAGAGCGAAAAGAAGATATAGAGCTTC
TTATGGAAATGTTAATAAAAAAATATAATGGTTTATTCGGCAAAATTGTTCATAAAATTGATAAAGAATGCAAAGATATT
TTGATAGATTATCCTTGGTATGGTAACGTAAGGGAACTTGAAAATGCAGTGGAATTCATGATAAATATGGCAGATGATAG
TGGTATAGTAACTATGGATATGCTTCCAGCTAATATAGTTGAAAATAAAAATTTTCAAGGACATGATATGAATATAGATG
AGGATATAAGACCTCTAAAAGATGTAGAGAAAGATTATATTTTAAGAGCTTTAGATATATATGGGCATGATACTAAAGGC
AAACGATTAGCAGCAGAACGTTTAGGAATAGGTATAGCTACTCTATATAGAAAATTAGAGGGGATAAAAAATTTATCAAA
GTGA

Upstream 100 bases:

>100_bases
ATTGTTTATGTTTACATTTAATTGTGATAAAATAATTTTATGGTATATATTGAAGTCTGTTGTAGAAAAAATAAAAATAT
TGTTTAAGGAATGATATAAA

Downstream 100 bases:

>100_bases
TAAGTTTTTAATATTTATTATCCCTAAATACAGTAAAAACGTATATTTTACTGTAATGATAATTAATTATTGTTTTGGTA
ATAAAACTATATGATTTTAA

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVIKTGEKQIIKNPGQHYLC
KKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLL
NQIIDSVDKGVLVTKNNEIVHMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVLSD
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITGESGTGKEVIARAIHCESDKN
TNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSN
HLIDLDIRVIAATNKDLKKLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHDMNIDEDIRPLKDVEKDYILRALDIYGHDTKG
KRLAAERLGIGIATLYRKLEGIKNLSK

Sequences:

>Translated_587_residues
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVIKTGEKQIIKNPGQHYLC
KKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLL
NQIIDSVDKGVLVTKNNEIVHMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVLSD
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITGESGTGKEVIARAIHCESDKN
TNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSN
HLIDLDIRVIAATNKDLKKLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHDMNIDEDIRPLKDVEKDYILRALDIYGHDTKG
KRLAAERLGIGIATLYRKLEGIKNLSK
>Mature_587_residues
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYDYVIKTGEKQIIKNPGQHYLC
KKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRNHFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLL
NQIIDSVDKGVLVTKNNEIVHMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVLSD
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITGESGTGKEVIARAIHCESDKN
TNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGKFELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSN
HLIDLDIRVIAATNKDLKKLIKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHDMNIDEDIRPLKDVEKDYILRALDIYGHDTKG
KRLAAERLGIGIATLYRKLEGIKNLSK

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=591, Percent_Identity=37.7326565143824, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1790437, Length=308, Percent_Identity=44.8051948051948, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI87082117, Length=320, Percent_Identity=43.75, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1788550, Length=340, Percent_Identity=44.1176470588235, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1789087, Length=353, Percent_Identity=41.3597733711048, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1788905, Length=296, Percent_Identity=45.6081081081081, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1790299, Length=336, Percent_Identity=39.2857142857143, Blast_Score=228, Evalue=6e-61,
Organism=Escherichia coli, GI1786524, Length=325, Percent_Identity=39.3846153846154, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI87082152, Length=240, Percent_Identity=45.8333333333333, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1787583, Length=254, Percent_Identity=38.1889763779528, Blast_Score=192, Evalue=5e-50,
Organism=Escherichia coli, GI87081872, Length=230, Percent_Identity=37.8260869565217, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI87081858, Length=541, Percent_Identity=25.1386321626617, Blast_Score=165, Evalue=9e-42,
Organism=Escherichia coli, GI1789828, Length=241, Percent_Identity=34.4398340248963, Blast_Score=147, Evalue=2e-36,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 66546; Mature: 66546

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYD
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCEEE
YVIKTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRN
EEEECCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCCH
HFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVTKNNEIV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCEE
HMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVLSD
EECHHHHHHEEEEECCCCCEEEEECCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHCC
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITG
CCCEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEC
ESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGK
CCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
FELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLKKL
EEECCCCEEEEECCCCCCEEHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCHHHHHH
IKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
HHHCCHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHDMNIDEDIRPLK
EECCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCHHHH
DVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLEGIKNLSK
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKGSTLLEIQDTVAKYANIISSVIKVDVEIVDKNLCRIAGTGIYKDAINKDISKEGYVYD
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCEEE
YVIKTGEKQIIKNPGQHYLCKKCNHRNNCLEKMLVCTPIILNDDIIGVIGLVCSKDSQRN
EEEECCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCCH
HFIENFDSFIQMLYQISDFISTKSYEHIEIERSHMMVDLLNQIIDSVDKGVLVTKNNEIV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCEE
HMNTSAMKQLKLKANNTNKKITISSTSEYIMGGEVYTIVIDNEKFQLMGRIIPVFPVLSD
EECHHHHHHEEEEECCCCCEEEEECCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHHCC
YDTIFVFEEIKHLKSKISKVSGGREVIKVEDIIGQSQAMVQLKNRIKKIASSSSTVLITG
CCCEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEC
ESGTGKEVIARAIHCESDKNTNPFIAINCGAIPDALLESELFGYVRGAFSGADPNGRVGK
CCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
FELANNGIIFLDEIGDMPLYLQVKILRVLQERKLVRIGSNHLIDLDIRVIAATNKDLKKL
EEECCCCEEEEECCCCCCEEHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCHHHHHH
IKENKFREDLYYRLNVIPLKIPPLRERKEDIELLMEMLIKKYNGLFGKIVHKIDKECKDI
HHHCCHHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
LIDYPWYGNVRELENAVEFMINMADDSGIVTMDMLPANIVENKNFQGHDMNIDEDIRPLK
EECCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCHHHH
DVEKDYILRALDIYGHDTKGKRLAAERLGIGIATLYRKLEGIKNLSK
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]