| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is alr [H]
Identifier: 170755191
GI number: 170755191
Start: 2114340
End: 2115407
Strand: Reverse
Name: alr [H]
Synonym: CLD_2651
Alternate gene names: 170755191
Gene position: 2115407-2114340 (Counterclockwise)
Preceding gene: 170756220
Following gene: 170755663
Centisome position: 53.44
GC content: 29.31
Gene sequence:
>1068_bases TTGGATAAAAGTTATCCATGTGTAGAAATAAACCTTAAAAATATAGCTCATAATATTAAACAACTTATTGATTTATGCAA TATAAAGGAAATAAAACCTGTAATAGTAACTAAGTCCTTTTGTGCAGAAAAATCAGTAGTAGAAACTATAATAAAGGAAG GAATTAAAACTATAGCAGATGCTAGAATGAAAAATCTTATGAAAATACAGGGTTTAAATTGTGAAAAGCTTCTTCTACGT ATACCTATGAAAAGCGAAGTTTCAAAGGTAATAGAATATTCAGATGTAAGTTTAAATTCAGAGTTAGAAATTATAAAAGA ATTATCAAAGGAAGCTAGAAAAGTTAATAAGATACATAAAATAATTCTTATGGTGGATTTAGGGGATCTAAGAGAGGGAG TTCTTCCAAAGGATGCATTATCTGCAGTAAAAGAGATAATAAAACTTCCAAACCTTAAATTTATAGGACTAGGAACGAAT CTTACCTGTTATGGTGGAGTTCTTCCAGATGAAAATAACCTGGGAAAACTATTAGAAATAAAGAATCAAATAGAAAAAGA ATTAAAAATAAAGGTTTCTATAGTGTCTGGAGGAAATTCTAGTAGTTTACATATGATTGTAAACGATTCCATACCTAAAG GCATAAACCAATTAAGAATAGGAGAGGCTGCTATATTAGGAAGGGAAACCGCTTATGGTCAAAAATTAAATGATTTTTAT GAGGATTCTATAACTTTAGTAGGAGAAATTATAGAATTAAAAGAAAAGCCTTCTATGCCAGAAGGAAATATAGGATTAGA TGCTTTTGGTAATAAACCAAGTTTTGAAGATAAAGGTATTATGAAAAGAGCCATACTTGCACTAGGACAGCAGGATATAA AACTGGATGGTCTTATTCCTAAGGATAATGAAATAGAAATACTAGGAGCAAGCAGTGACCATTTATTATTAGATCTAACG AAATGTAAAAACCAATATAAAATAGGAGATACTGTGGAGTTTAATATGAATTATGGATGTCTACTCACAGCTATGACTTC TGAATATGTAACTAAATATAGTAAATAA
Upstream 100 bases:
>100_bases ATTTTCTATAAAATTTAATTTAATTAATAATTATTTCAAAACATATGAATTATATAGTATAATGTAGTAAGTTTATTAAA ATAAATTGGGGGGTGAGCTT
Downstream 100 bases:
>100_bases ATATTGCTTTATAAAATTGAATCTTATTAAAAGTCAATACTTATTAAATTTTCTTATAATTACATATTAAACCATAAATC TTTCTTATTAGACAAAATAT
Product: alanine racemase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MDKSYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFCAEKSVVETIIKEGIKTIADARMKNLMKIQGLNCEKLLLR IPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHKIILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTN LTCYGGVLPDENNLGKLLEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIKLDGLIPKDNEIEILGASSDHLLLDLT KCKNQYKIGDTVEFNMNYGCLLTAMTSEYVTKYSK
Sequences:
>Translated_355_residues MDKSYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFCAEKSVVETIIKEGIKTIADARMKNLMKIQGLNCEKLLLR IPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHKIILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTN LTCYGGVLPDENNLGKLLEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIKLDGLIPKDNEIEILGASSDHLLLDLT KCKNQYKIGDTVEFNMNYGCLLTAMTSEYVTKYSK >Mature_355_residues MDKSYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFCAEKSVVETIIKEGIKTIADARMKNLMKIQGLNCEKLLLR IPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHKIILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTN LTCYGGVLPDENNLGKLLEIKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIKLDGLIPKDNEIEILGASSDHLLLDLT KCKNQYKIGDTVEFNMNYGCLLTAMTSEYVTKYSK
Specific function: Provides the D-alanine required for cell wall biosynthesis [H]
COG id: COG3457
COG function: function code E; Predicted amino acid racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alanine racemase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000821 - InterPro: IPR009006 - InterPro: IPR011079 - InterPro: IPR001608 - InterPro: IPR020622 [H]
Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]
EC number: =5.1.1.1 [H]
Molecular weight: Translated: 39418; Mature: 39418
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKSYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFCAEKSVVETIIKEGIKTIAD CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH ARMKNLMKIQGLNCEKLLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHK HHHHHHHHHCCCCHHHHHEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH IILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTNLTCYGGVLPDENNLGKLLEI EEEEEECCHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCHHHHHH KNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY HHHHHHEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHH EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIKLDGLIP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCC KDNEIEILGASSDHLLLDLTKCKNQYKIGDTVEFNMNYGCLLTAMTSEYVTKYSK CCCCEEEEECCCCCEEEEHHHCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHCCC >Mature Secondary Structure MDKSYPCVEINLKNIAHNIKQLIDLCNIKEIKPVIVTKSFCAEKSVVETIIKEGIKTIAD CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH ARMKNLMKIQGLNCEKLLLRIPMKSEVSKVIEYSDVSLNSELEIIKELSKEARKVNKIHK HHHHHHHHHCCCCHHHHHEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH IILMVDLGDLREGVLPKDALSAVKEIIKLPNLKFIGLGTNLTCYGGVLPDENNLGKLLEI EEEEEECCHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCHHHHHH KNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILGRETAYGQKLNDFY HHHHHHEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHH EDSITLVGEIIELKEKPSMPEGNIGLDAFGNKPSFEDKGIMKRAILALGQQDIKLDGLIP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCC KDNEIEILGASSDHLLLDLTKCKNQYKIGDTVEFNMNYGCLLTAMTSEYVTKYSK CCCCEEEEECCCCCEEEEHHHCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA