| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755173
Identifier: 170755173
GI number: 170755173
Start: 2257054
End: 2258166
Strand: Reverse
Name: 170755173
Synonym: CLD_2517
Alternate gene names: NA
Gene position: 2258166-2257054 (Counterclockwise)
Preceding gene: 170756025
Following gene: 170757498
Centisome position: 57.05
GC content: 38.27
Gene sequence:
>1113_bases ATGAATGGAGATTCAAAAGCAGTAAGCTTAGAAGCGGTTGCTGCGAAGAAGAAATTATCAAGTGATTTCTTCAAAAAGGG TATATCCCTGGCTTTATTTTCAGGACTTGCCTATGGATTATATACCGCGTTTTTAACTATGGGTATGACTAAAGGAGTTT GGGGGGACTGGTATGGTCCTAATACAGCAGGTTTATCAGCATTTGCTATAGCATACTTGCTTGCAGCCCTTGGTAATGCC ATAAACGACACATGCAGTGCTGTTTGGGCACTTTTGTATGCAGGAGTTAAAGGTAAATTTGGAGACTTTTTAAGATGCAT CAACACAAAGCCGGGACGTATCATGATATTAGCAGCTCTTATCGGAGGACCTATAGCTGGTACTGCTTATGTTATAGCTC TTCAAATGGCTGGTTCAATAGTTGTTCCAATATCAGCTCTTTGTCCTGCAATTGCAGCTATACTAGGTAAAATTTTGTAC AAGCAAGAACTAAATAAGCGTATGGCTTTTGGTATTTTAATATGCGTATGTGCAAGTTTTCTAATTGGTAGTACAGGCCT TAGTGGTGGTGCTTCAGCAAATACATTAATTGGTATTGCAATAGCTATTATTGCAGCTTTAGGTTGGGGATTTGAAGGTT GTGTAGCTGGATATGGTACAGCAATGATTGACCCTGAAATTGGTATTTGTATTCGTCAAGTAACATCAGGTATAGCAAAT TTATTCATCTTAGTTCCAATTTTCGGAATGATGGCTGGTGGAATTGGAATCTCTACTGATCTTGCTGTAAAAGCATTTAC AAGTTCTCCTGCAATGGTTTGGTTTGCTTTAAGTGGACTTTTATCATTCGTAACATTCATGACATGGTATGCTGGAAACA GTATGTGTGGAGCAGGACTTGGTACTGCATGCAATGGTACATATTCTTTCTTTGGACCATTATTCTGCTTATTAGTATTA GGAGTATATGGTGGAATGGACGGATGGTCATTACCTCCTGTAGCTTGGATTGGAGCTGTAATAATGATGTTTGGTATTCT TACAATATCTATGAATCCACTTGATTTATTCAAAGGAAAGAAAATGGAGGTAGATATAGATGAAACCGCTTAA
Upstream 100 bases:
>100_bases AAATTATAACAATCTTAATGTATATTTATTATAAATTTTTATTTAACAATATGAATTTATAATATTATTAATTTTTTATA AGCGAAAGGAGAATTATTTT
Downstream 100 bases:
>100_bases TTATGCAATTTTAAAATATTTTACTAAAGTTTCAGAAGCTTGTGCTGATGATGTTATAAAGGCGTTAAAAGGACAATATG GAAATTTTAAGGCTCTAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein MttP; Integral Membrane; Integral Membrane Protein Domain Protein; Choline Transport Or Trimethylamine Permease; Transporter Drug/Metabolite Exporter Family; Integral Membrane Protein
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MNGDSKAVSLEAVAAKKKLSSDFFKKGISLALFSGLAYGLYTAFLTMGMTKGVWGDWYGPNTAGLSAFAIAYLLAALGNA INDTCSAVWALLYAGVKGKFGDFLRCINTKPGRIMILAALIGGPIAGTAYVIALQMAGSIVVPISALCPAIAAILGKILY KQELNKRMAFGILICVCASFLIGSTGLSGGASANTLIGIAIAIIAALGWGFEGCVAGYGTAMIDPEIGICIRQVTSGIAN LFILVPIFGMMAGGIGISTDLAVKAFTSSPAMVWFALSGLLSFVTFMTWYAGNSMCGAGLGTACNGTYSFFGPLFCLLVL GVYGGMDGWSLPPVAWIGAVIMMFGILTISMNPLDLFKGKKMEVDIDETA
Sequences:
>Translated_370_residues MNGDSKAVSLEAVAAKKKLSSDFFKKGISLALFSGLAYGLYTAFLTMGMTKGVWGDWYGPNTAGLSAFAIAYLLAALGNA INDTCSAVWALLYAGVKGKFGDFLRCINTKPGRIMILAALIGGPIAGTAYVIALQMAGSIVVPISALCPAIAAILGKILY KQELNKRMAFGILICVCASFLIGSTGLSGGASANTLIGIAIAIIAALGWGFEGCVAGYGTAMIDPEIGICIRQVTSGIAN LFILVPIFGMMAGGIGISTDLAVKAFTSSPAMVWFALSGLLSFVTFMTWYAGNSMCGAGLGTACNGTYSFFGPLFCLLVL GVYGGMDGWSLPPVAWIGAVIMMFGILTISMNPLDLFKGKKMEVDIDETA >Mature_370_residues MNGDSKAVSLEAVAAKKKLSSDFFKKGISLALFSGLAYGLYTAFLTMGMTKGVWGDWYGPNTAGLSAFAIAYLLAALGNA INDTCSAVWALLYAGVKGKFGDFLRCINTKPGRIMILAALIGGPIAGTAYVIALQMAGSIVVPISALCPAIAAILGKILY KQELNKRMAFGILICVCASFLIGSTGLSGGASANTLIGIAIAIIAALGWGFEGCVAGYGTAMIDPEIGICIRQVTSGIAN LFILVPIFGMMAGGIGISTDLAVKAFTSSPAMVWFALSGLLSFVTFMTWYAGNSMCGAGLGTACNGTYSFFGPLFCLLVL GVYGGMDGWSLPPVAWIGAVIMMFGILTISMNPLDLFKGKKMEVDIDETA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38347; Mature: 38347
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGDSKAVSLEAVAAKKKLSSDFFKKGISLALFSGLAYGLYTAFLTMGMTKGVWGDWYGP CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC NTAGLSAFAIAYLLAALGNAINDTCSAVWALLYAGVKGKFGDFLRCINTKPGRIMILAAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEHHH IGGPIAGTAYVIALQMAGSIVVPISALCPAIAAILGKILYKQELNKRMAFGILICVCASF HCCCCHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGSTGLSGGASANTLIGIAIAIIAALGWGFEGCVAGYGTAMIDPEIGICIRQVTSGIAN HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHH LFILVPIFGMMAGGIGISTDLAVKAFTSSPAMVWFALSGLLSFVTFMTWYAGNSMCGAGL HHHHHHHHHHHHCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GTACNGTYSFFGPLFCLLVLGVYGGMDGWSLPPVAWIGAVIMMFGILTISMNPLDLFKGK CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCC KMEVDIDETA CEEECCCCCC >Mature Secondary Structure MNGDSKAVSLEAVAAKKKLSSDFFKKGISLALFSGLAYGLYTAFLTMGMTKGVWGDWYGP CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC NTAGLSAFAIAYLLAALGNAINDTCSAVWALLYAGVKGKFGDFLRCINTKPGRIMILAAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEHHH IGGPIAGTAYVIALQMAGSIVVPISALCPAIAAILGKILYKQELNKRMAFGILICVCASF HCCCCHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGSTGLSGGASANTLIGIAIAIIAALGWGFEGCVAGYGTAMIDPEIGICIRQVTSGIAN HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHH LFILVPIFGMMAGGIGISTDLAVKAFTSSPAMVWFALSGLLSFVTFMTWYAGNSMCGAGL HHHHHHHHHHHHCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GTACNGTYSFFGPLFCLLVLGVYGGMDGWSLPPVAWIGAVIMMFGILTISMNPLDLFKGK CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCC KMEVDIDETA CEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA