| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is hflX [H]
Identifier: 170755107
GI number: 170755107
Start: 3322958
End: 3324742
Strand: Reverse
Name: hflX [H]
Synonym: CLD_1460
Alternate gene names: 170755107
Gene position: 3324742-3322958 (Counterclockwise)
Preceding gene: 170756385
Following gene: 170754287
Centisome position: 84.0
GC content: 28.12
Gene sequence:
>1785_bases ATGATATATGGTAATATTGATGGAATAAGAAAAACTGTTTTAGAGGAATTAGAACAAATATATGAAATGAAAATAGAAAA GAATGACATCGTTAACGAAGAACTAATGAATGTATTATGCAAATTAACAGAACAGTTAAATAGAGAAATAAGTGTAGGAA TATCTAGAAAAGGTGGTATAATAGCAGTTTCCGTAGGAGATAGTACAACTGTAGAAATGCCAGAAGTAGAAATTAAAGCC AATAAGCTTTCTGGCATAAGAATTGTTCATACTCACCCAAATGGTAATCCTAAACTTTCCTCAGTAGATTTATCTGCATT ATTAAAATTGAAATTAGATTGTATGGTAGCTATAGGAGTAGAGTATGAAAAGATAACAGGATTTGGTGTGGCTTTTTGTA CTATGGAGGATAGTAAACTAAGTATAGAGGAAAAGTATTTTAAAGATATAAATAGCCTATTAGACTTTAATTTATTAAAT GAAATAAATCATATAGAACAAAATTTGAAAAATGAAGAATTAGAAGATCAGGAAGAAGAAAAGGTTATACTTGTTAGTAT TGATGATGAAGAAAGTATAGATGAATTAGAAGAATTGGCTAAGGCTTGTAATTTAAAAGTTGTGGAAAAAGTACTACAAA ATAAAAATAAAATTGATTCAGCCTATTATATAGGCACAGGTAAGGTAGGAGAAATAGCCTTAATAAGGCAGGCTTTGAAT GCAGATGCAGTAATATTTGATGATGAACTTTCTGCCTCTCAAATAAGAAATTTAGAAGAGTCTATAGGAACTAAAGTAAT AGATAGAAATACATTAATATTAGATATATTTGCAAGAAGAGCGAAAAGTAAAGAAAGTAAAATACAGGTAGAACTTGCAC AATTAAAATATAGATTGTCAAGATTAACAGGCTTAGGATTGGTTCTATCAAGAACAGGTGGAGGAATAGGTACAAAAGGA CCAGGTGAAAAAAAACTAGAAACAGATAAAAGACATATAAGAGAAAGAGTTTATGATTTAAAGAAAGAATTATATAAAAT AAAAAAAGTTAGAGAAACTCAAAGAAGTAAAAGAAATGATATACCTAAGGTTTCTTTAGTAGGATATACTAATGCAGGTA AATCTACATTAAGAAACAAATTATGTGATACAGGAATAGCTAGTGCACAAAATAAAGAAAAAGTTTTTGAGGCAGATATG TTATTTGCTACATTAGACATCACAACTAGAGCAATATCATTACCTAACAATGAAATTATAACATTGACGGATACAGTAGG TTTTGTAAGAAAGCTTCCTCATGAATTAGTAGAAGCTTTTAAATCCACATTAGAAGAAGTTATTTACTCTGATTTACTTC TACATGTAATAGACATTTCCTCGGATACAGCAGAAAAACAAATAGATGCAGTTAATAATGTATTAGAGGAATTAGGAACA GAAAATAAACCAATAATATTAGTATTTAATAAAATAGATAAAGTTTCAATGGAAAGATTAAATTATTTCAGAGATAAATT TAAAGATGAAAAGGTTATAGAAATATCCGCTAGACTAGGTATAAATCTTGAAGACTTGTTAAAGCTAATAGAGGAAACAT TGCCATATAAATTATCAGAAGCAGAGTATATAATTCCATACGATAAACAAAAATCAGTAGCATTTTTGCATAGAAACAGT AAAATAATAGAAGAAGAATATAGAGAAAAAGGAACTTACATTAAAACAAAGGTAGATACGGAAGTTTATAATAAGTGTCA GGAATTTCTCGTTAATAAAGAATAA
Upstream 100 bases:
>100_bases TATTGTTTTTATAGTATAAAATTATATGAAAGTTGTCAAGGTATAGAGTAAAGCCTAATAAATCTTTTTATTATAATTTG TATAGAAAGGTAGATATTAA
Downstream 100 bases:
>100_bases AAAATATAATTTTTAAATTGTTCATTAAAAAGTAACAAATAGAAAAAGGAATTATTAACAAGGTGTAGAATATAATAATT ACAAAATAATTATTATTAAT
Product: GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 594; Mature: 594
Protein sequence:
>594_residues MIYGNIDGIRKTVLEELEQIYEMKIEKNDIVNEELMNVLCKLTEQLNREISVGISRKGGIIAVSVGDSTTVEMPEVEIKA NKLSGIRIVHTHPNGNPKLSSVDLSALLKLKLDCMVAIGVEYEKITGFGVAFCTMEDSKLSIEEKYFKDINSLLDFNLLN EINHIEQNLKNEELEDQEEEKVILVSIDDEESIDELEELAKACNLKVVEKVLQNKNKIDSAYYIGTGKVGEIALIRQALN ADAVIFDDELSASQIRNLEESIGTKVIDRNTLILDIFARRAKSKESKIQVELAQLKYRLSRLTGLGLVLSRTGGGIGTKG PGEKKLETDKRHIRERVYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADM LFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLEELGT ENKPIILVFNKIDKVSMERLNYFRDKFKDEKVIEISARLGINLEDLLKLIEETLPYKLSEAEYIIPYDKQKSVAFLHRNS KIIEEEYREKGTYIKTKVDTEVYNKCQEFLVNKE
Sequences:
>Translated_594_residues MIYGNIDGIRKTVLEELEQIYEMKIEKNDIVNEELMNVLCKLTEQLNREISVGISRKGGIIAVSVGDSTTVEMPEVEIKA NKLSGIRIVHTHPNGNPKLSSVDLSALLKLKLDCMVAIGVEYEKITGFGVAFCTMEDSKLSIEEKYFKDINSLLDFNLLN EINHIEQNLKNEELEDQEEEKVILVSIDDEESIDELEELAKACNLKVVEKVLQNKNKIDSAYYIGTGKVGEIALIRQALN ADAVIFDDELSASQIRNLEESIGTKVIDRNTLILDIFARRAKSKESKIQVELAQLKYRLSRLTGLGLVLSRTGGGIGTKG PGEKKLETDKRHIRERVYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADM LFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLEELGT ENKPIILVFNKIDKVSMERLNYFRDKFKDEKVIEISARLGINLEDLLKLIEETLPYKLSEAEYIIPYDKQKSVAFLHRNS KIIEEEYREKGTYIKTKVDTEVYNKCQEFLVNKE >Mature_594_residues MIYGNIDGIRKTVLEELEQIYEMKIEKNDIVNEELMNVLCKLTEQLNREISVGISRKGGIIAVSVGDSTTVEMPEVEIKA NKLSGIRIVHTHPNGNPKLSSVDLSALLKLKLDCMVAIGVEYEKITGFGVAFCTMEDSKLSIEEKYFKDINSLLDFNLLN EINHIEQNLKNEELEDQEEEKVILVSIDDEESIDELEELAKACNLKVVEKVLQNKNKIDSAYYIGTGKVGEIALIRQALN ADAVIFDDELSASQIRNLEESIGTKVIDRNTLILDIFARRAKSKESKIQVELAQLKYRLSRLTGLGLVLSRTGGGIGTKG PGEKKLETDKRHIRERVYDLKKELYKIKKVRETQRSKRNDIPKVSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADM LFATLDITTRAISLPNNEIITLTDTVGFVRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLEELGT ENKPIILVFNKIDKVSMERLNYFRDKFKDEKVIEISARLGINLEDLLKLIEETLPYKLSEAEYIIPYDKQKSVAFLHRNS KIIEEEYREKGTYIKTKVDTEVYNKCQEFLVNKE
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=221, Percent_Identity=37.10407239819, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI310133116, Length=221, Percent_Identity=37.10407239819, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI310124269, Length=212, Percent_Identity=37.2641509433962, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI310124267, Length=212, Percent_Identity=37.2641509433962, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI310124171, Length=212, Percent_Identity=37.2641509433962, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI310124169, Length=212, Percent_Identity=37.2641509433962, Blast_Score=122, Evalue=1e-27, Organism=Escherichia coli, GI1790615, Length=400, Percent_Identity=39.25, Blast_Score=267, Evalue=1e-72, Organism=Caenorhabditis elegans, GI17561038, Length=291, Percent_Identity=32.6460481099656, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24650079, Length=360, Percent_Identity=30.8333333333333, Blast_Score=121, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 67430; Mature: 67430
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYGNIDGIRKTVLEELEQIYEMKIEKNDIVNEELMNVLCKLTEQLNREISVGISRKGGI CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCE IAVSVGDSTTVEMPEVEIKANKLSGIRIVHTHPNGNPKLSSVDLSALLKLKLDCMVAIGV EEEECCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECC EYEKITGFGVAFCTMEDSKLSIEEKYFKDINSLLDFNLLNEINHIEQNLKNEELEDQEEE CHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KVILVSIDDEESIDELEELAKACNLKVVEKVLQNKNKIDSAYYIGTGKVGEIALIRQALN CEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHC ADAVIFDDELSASQIRNLEESIGTKVIDRNTLILDIFARRAKSKESKIQVELAQLKYRLS CCEEEEECCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH RLTGLGLVLSRTGGGIGTKGPGEKKLETDKRHIRERVYDLKKELYKIKKVRETQRSKRND HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IPKVSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADMLFATLDITTRAISLPNNEII CCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEHHHEEEECCCCCEE TLTDTVGFVRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLEELGT EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC ENKPIILVFNKIDKVSMERLNYFRDKFKDEKVIEISARLGINLEDLLKLIEETLPYKLSE CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCEECC AEYIIPYDKQKSVAFLHRNSKIIEEEYREKGTYIKTKVDTEVYNKCQEFLVNKE CCEEECCCCCCCEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCC >Mature Secondary Structure MIYGNIDGIRKTVLEELEQIYEMKIEKNDIVNEELMNVLCKLTEQLNREISVGISRKGGI CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCE IAVSVGDSTTVEMPEVEIKANKLSGIRIVHTHPNGNPKLSSVDLSALLKLKLDCMVAIGV EEEECCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECC EYEKITGFGVAFCTMEDSKLSIEEKYFKDINSLLDFNLLNEINHIEQNLKNEELEDQEEE CHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KVILVSIDDEESIDELEELAKACNLKVVEKVLQNKNKIDSAYYIGTGKVGEIALIRQALN CEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHC ADAVIFDDELSASQIRNLEESIGTKVIDRNTLILDIFARRAKSKESKIQVELAQLKYRLS CCEEEEECCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH RLTGLGLVLSRTGGGIGTKGPGEKKLETDKRHIRERVYDLKKELYKIKKVRETQRSKRND HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IPKVSLVGYTNAGKSTLRNKLCDTGIASAQNKEKVFEADMLFATLDITTRAISLPNNEII CCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEHHHEEEECCCCCEE TLTDTVGFVRKLPHELVEAFKSTLEEVIYSDLLLHVIDISSDTAEKQIDAVNNVLEELGT EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC ENKPIILVFNKIDKVSMERLNYFRDKFKDEKVIEISARLGINLEDLLKLIEETLPYKLSE CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHHHCCCEECC AEYIIPYDKQKSVAFLHRNSKIIEEEYREKGTYIKTKVDTEVYNKCQEFLVNKE CCEEECCCCCCCEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]