Click here to switch to the map view.

The map label for this gene is yfdV [C]

Identifier: 170755026

GI number: 170755026

Start: 2742441

End: 2743349

Strand: Reverse

Name: yfdV [C]

Synonym: CLD_1993

Alternate gene names: 170755026

Gene position: 2743349-2742441 (Counterclockwise)

Preceding gene: 170755800

Following gene: 170757551

Centisome position: 69.31

GC content: 28.05

Gene sequence:

>909_bases
TTGAAGAGTAATATTATTAATCAGGTTTTAATTCTTTCTATAATAATGGGGATAGGAGTTATTTGTGGAAAAAGAAAAAT
TTTAAATGAAGAAGCAACTAAAAGACTTTCAGATTTTTTAGTTAAAGTTACTTTACCCTGTCTCATTCTCTCTTCTTTTA
ACTATAATTTTACTGAAGATATGATAAAAAACGCTAAGATGTTTTTTATATATTCAATAATTATACATATAGCTTTAATA
TTGATAAGTGGTTTGTTTTTTCTAAAATATAATGAAAGAGCTAGGAAAGTACTTAAATTTTCTACTATATTTTCTAATAG
TGCATTTATGGGGTATCCTGTAATAGAAGCTTTATATGGCAAAATTGGAGTATTTTATGCTTCGATTTTTGGCATACCAT
TTAATATATTTATGCTGTCTGCAGGTATTATGATATATACAGGAGAAAGAGATGCTAAGAACTTAAAGGGTATATTAAAA
CATCCTGGTATAATTGCTACAGTATTAGGTATGTTTATACTTGTGTTTTCAATTTCTATTCCTATACCTATAAACACAGC
TTTACAATATGTTGGATCTATGACTACTCCTTTATCCATGATAATAGTGGGTTCAATGCTTGCAGATATAAATATAAAGG
AGATTTTTTCAGGAACGGAGGCTTATTATGGATCTTTTGTTAGACTTATAATAATACCTGCTTTAGTTTATATTTTAATG
ATTGTAGTAAAAGCTGACAAGCTTTTACTAGAAATATGTGTAATATTAGAAGCTATGCCTACAGCGGTATTAGCTACTGT
GCTTGCAGAAGAATATGATGGAGATGTGGTTTTAGCAGCTAAGTGCGTATTTATAACTACTATTTTATCCGTTATAACTA
TACCTTTAGTAGTAGCTTTTATAAGTTAA

Upstream 100 bases:

>100_bases
ATAAAAAGATCCTCCTTTTTTAGTATAATAATAAAAAGGGGGATTTTTCTTTTGAAAATAATTAAATATTTATATTAATT
TAAAATATGGGGGTTTTCTT

Downstream 100 bases:

>100_bases
ATATATCTGGCTTATTAAAGGATATATTTAGTATGACAAAAGCTTTAATTGTATTGTATAATATAGATATTAATTTAAAA
TTATTTTTTTACCTATATTG

Product: auxin efflux carrier family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKSNIINQVLILSIIMGIGVICGKRKILNEEATKRLSDFLVKVTLPCLILSSFNYNFTEDMIKNAKMFFIYSIIIHIALI
LISGLFFLKYNERARKVLKFSTIFSNSAFMGYPVIEALYGKIGVFYASIFGIPFNIFMLSAGIMIYTGERDAKNLKGILK
HPGIIATVLGMFILVFSISIPIPINTALQYVGSMTTPLSMIIVGSMLADINIKEIFSGTEAYYGSFVRLIIIPALVYILM
IVVKADKLLLEICVILEAMPTAVLATVLAEEYDGDVVLAAKCVFITTILSVITIPLVVAFIS

Sequences:

>Translated_302_residues
MKSNIINQVLILSIIMGIGVICGKRKILNEEATKRLSDFLVKVTLPCLILSSFNYNFTEDMIKNAKMFFIYSIIIHIALI
LISGLFFLKYNERARKVLKFSTIFSNSAFMGYPVIEALYGKIGVFYASIFGIPFNIFMLSAGIMIYTGERDAKNLKGILK
HPGIIATVLGMFILVFSISIPIPINTALQYVGSMTTPLSMIIVGSMLADINIKEIFSGTEAYYGSFVRLIIIPALVYILM
IVVKADKLLLEICVILEAMPTAVLATVLAEEYDGDVVLAAKCVFITTILSVITIPLVVAFIS
>Mature_302_residues
MKSNIINQVLILSIIMGIGVICGKRKILNEEATKRLSDFLVKVTLPCLILSSFNYNFTEDMIKNAKMFFIYSIIIHIALI
LISGLFFLKYNERARKVLKFSTIFSNSAFMGYPVIEALYGKIGVFYASIFGIPFNIFMLSAGIMIYTGERDAKNLKGILK
HPGIIATVLGMFILVFSISIPIPINTALQYVGSMTTPLSMIIVGSMLADINIKEIFSGTEAYYGSFVRLIIIPALVYILM
IVVKADKLLLEICVILEAMPTAVLATVLAEEYDGDVVLAAKCVFITTILSVITIPLVVAFIS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776
- InterPro:   IPR014024 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33329; Mature: 33329

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNIINQVLILSIIMGIGVICGKRKILNEEATKRLSDFLVKVTLPCLILSSFNYNFTED
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
MIKNAKMFFIYSIIIHIALILISGLFFLKYNERARKVLKFSTIFSNSAFMGYPVIEALYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
KIGVFYASIFGIPFNIFMLSAGIMIYTGERDAKNLKGILKHPGIIATVLGMFILVFSISI
HHHHHHHHHHCCHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PIPINTALQYVGSMTTPLSMIIVGSMLADINIKEIFSGTEAYYGSFVRLIIIPALVYILM
CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IVVKADKLLLEICVILEAMPTAVLATVLAEEYDGDVVLAAKCVFITTILSVITIPLVVAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
IS
CC
>Mature Secondary Structure
MKSNIINQVLILSIIMGIGVICGKRKILNEEATKRLSDFLVKVTLPCLILSSFNYNFTED
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
MIKNAKMFFIYSIIIHIALILISGLFFLKYNERARKVLKFSTIFSNSAFMGYPVIEALYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
KIGVFYASIFGIPFNIFMLSAGIMIYTGERDAKNLKGILKHPGIIATVLGMFILVFSISI
HHHHHHHHHHCCHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PIPINTALQYVGSMTTPLSMIIVGSMLADINIKEIFSGTEAYYGSFVRLIIIPALVYILM
CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IVVKADKLLLEICVILEAMPTAVLATVLAEEYDGDVVLAAKCVFITTILSVITIPLVVAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
IS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]