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The map label for this gene is ydcN [H]

Identifier: 170755017

GI number: 170755017

Start: 746550

End: 747101

Strand: Reverse

Name: ydcN [H]

Synonym: CLD_0134

Alternate gene names: 170755017

Gene position: 747101-746550 (Counterclockwise)

Preceding gene: 170756045

Following gene: 170755877

Centisome position: 18.87

GC content: 29.53

Gene sequence:

>552_bases
ATGAATATAAATTCTATTATTGCAGAAAACCTAAAAACACTTCGTACTGAACGAAATTTAAGTTTAGGGCAACTTGCTGA
ACTATCTAATATTAGTAAAGTCATGCTATCTCAAATTGAAAAAGGTGATACTAATCCAACTATAAACACTTTATGGAAAA
TAGCTAACGGATTAAAAGTTCCTTATACTTTATTACTTGAACAAAAAGAACATGATACTTGTATTATAAAGAAGAGTAAT
CTTGAACCTCAGATTTCTGAAGAAGGGCATTATCGGGCTTATTGCTACTACACTAATACACCTTATCGTAATTTTGAAAT
TTTCCAGATTGAACTTGATGAAGGCTGCTCATATAGCTCTGTAGGTCATTCTAAAAAATCAGAGGAATATATTATGGTGC
TGGAAGGGGAATTAACATTAAAAGTGAACAATGAAACTTATAAACTAAGTCCTAATGATTCAATTAGTTTCTCAGCATCT
AACAAACATATATATTATAATAATGGAAATGTAACTCTAAAGGCTACAATAACAAATTTTTATCCTGTCTAA

Upstream 100 bases:

>100_bases
GCGTTATAATATCTTACGAATGTTAAATATATTTAACGTTAGTTTTATTTTACTTTAGTTAATTATAATTGTCAACATAA
TTATAGGAGGTTATACCCTA

Downstream 100 bases:

>100_bases
TAATTAGGCAGGATATTTTAAAACATTTTTATATTGTTAACATGATTTAATTTTCAGCATATATAACATACTTCCATTTT
TCACATCCTAATTTTCCCAT

Product: cupin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQKEHDTCIIKKSN
LEPQISEEGHYRAYCYYTNTPYRNFEIFQIELDEGCSYSSVGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSAS
NKHIYYNNGNVTLKATITNFYPV

Sequences:

>Translated_183_residues
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQKEHDTCIIKKSN
LEPQISEEGHYRAYCYYTNTPYRNFEIFQIELDEGCSYSSVGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSAS
NKHIYYNNGNVTLKATITNFYPV
>Mature_183_residues
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQKEHDTCIIKKSN
LEPQISEEGHYRAYCYYTNTPYRNFEIFQIELDEGCSYSSVGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSAS
NKHIYYNNGNVTLKATITNFYPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=181, Percent_Identity=34.2541436464088, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20902; Mature: 20902

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
PYTLLLEQKEHDTCIIKKSNLEPQISEEGHYRAYCYYTNTPYRNFEIFQIELDEGCSYSS
CEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCC
VGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSASNKHIYYNNGNVTLKATITNF
CCCCCCCCCEEEEEECEEEEEECCCEEEECCCCCEEEEECCCEEEEECCCEEEEEEEEEE
YPV
CCC
>Mature Secondary Structure
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
PYTLLLEQKEHDTCIIKKSNLEPQISEEGHYRAYCYYTNTPYRNFEIFQIELDEGCSYSS
CEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCC
VGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSASNKHIYYNNGNVTLKATITNF
CCCCCCCCCEEEEEECEEEEEECCCEEEECCCCCEEEEECCCEEEEECCCEEEEEEEEEE
YPV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]