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The map label for this gene is ytqA [H]

Identifier: 170754861

GI number: 170754861

Start: 3870972

End: 3871904

Strand: Reverse

Name: ytqA [H]

Synonym: CLD_0929

Alternate gene names: 170754861

Gene position: 3871904-3870972 (Counterclockwise)

Preceding gene: 170756157

Following gene: 170757749

Centisome position: 97.82

GC content: 29.37

Gene sequence:

>933_bases
ATGGAAAGAAAATGGTATGATAAGCCATATCATAGCTTAAATTATTTTTTAAGAAATAAATTTGGCTGTAAAGTTTTTAA
AATATCATTGGATGCTGGATTTTCTTGTCCTAACAGAGATGGGAAGGTAAGTAAAGGAGGATGTATATATTGCAGCGAAA
GAGGCTCAGGAGATTTTGCAGGAGATAGGAATTTTAAGATACATAAACAGTTTGAGGATATAAAAAAAATAATGAAAGAA
AAATGGAGTAGTGATAAATACATTGCTTATTTTCAAGCTTATACTAATACTTATGCTCCTGTAAATATATTAAGAGAAAA
GTATGAGGAAGCTATGAGTGAGGAAGGTGTAGTTGCTTTAGCTATAGCAACAAGACCAGATTGCTTAGATCAAGATGTTT
TAAATCTTATAGAAGAATTAAGTAAAAAAAAATATATATGGGTAGAATTAGGACTTCAAACTGTAAATGATGAAACAGCT
AAAATTATAAATAGAGGATATGAGTTAAATGTTTTTGAAAAAGCGGTAAAAGATTTAAGGGAGAGAAATATAGATATAGT
GGTACATAGCATATTTGGATTACCAGGGGAAACAAAAGAAGATATGATAGGGACAGTTAAATATATATCTAAATTAGATA
TTCAAGGAGTTAAGTTTCATTTATTACATCTTTTAAAGGATACTCCTCTAGTAAAATTATATGAAAGCGGTAATTTAGAA
TTTTTGGATATGGATGAGTATGTAGAATTAATATGCGAAGCTATAACTTTATTACCACCTAACATGGTTGTCCATAGGCT
TACAGGGGATGCGCCTAGAAACCTTTTAATAGGACCTATGTGGAGTCTTAAGAAATGGGAAGTTTTAAATGCTATAGATA
AAAAAATGAAGGAAGATAATTTATATCAGGGCAAAAATTTTAAAGATAAATAA

Upstream 100 bases:

>100_bases
GATCTAAAAGAATTTAAAGTTAAAAAAATGTAGTTGTTTTGAAAAAAAAGTATCTGTGACATATAATATTCACAGATACT
TTTTTTTGGAGGAATTTATT

Downstream 100 bases:

>100_bases
AATCCACATAAATATTTAAAATATTAAATAATGGGGGGAGCTTTATGAATATTGATATAGTAATTTCAGCTGATCATATA
GATGAGAAGAGGTTGATTAA

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKE
KWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEELSKKKYIWVELGLQTVNDETA
KIINRGYELNVFEKAVKDLRERNIDIVVHSIFGLPGETKEDMIGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLIGPMWSLKKWEVLNAIDKKMKEDNLYQGKNFKDK

Sequences:

>Translated_310_residues
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKE
KWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEELSKKKYIWVELGLQTVNDETA
KIINRGYELNVFEKAVKDLRERNIDIVVHSIFGLPGETKEDMIGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLIGPMWSLKKWEVLNAIDKKMKEDNLYQGKNFKDK
>Mature_310_residues
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKE
KWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEELSKKKYIWVELGLQTVNDETA
KIINRGYELNVFEKAVKDLRERNIDIVVHSIFGLPGETKEDMIGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLIGPMWSLKKWEVLNAIDKKMKEDNLYQGKNFKDK

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=286, Percent_Identity=34.6153846153846, Blast_Score=221, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35905; Mature: 35905

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFA
CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCC
GDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVAL
CCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHCCCCEEEE
AIATRPDCLDQDVLNLIEELSKKKYIWVELGLQTVNDETAKIINRGYELNVFEKAVKDLR
EEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
ERNIDIVVHSIFGLPGETKEDMIGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
HCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCEE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLIGPMWSLKKWEVLNAIDKKMKEDN
EEEHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC
LYQGKNFKDK
CCCCCCCCCC
>Mature Secondary Structure
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFA
CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCC
GDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVAL
CCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHCCCCEEEE
AIATRPDCLDQDVLNLIEELSKKKYIWVELGLQTVNDETAKIINRGYELNVFEKAVKDLR
EEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
ERNIDIVVHSIFGLPGETKEDMIGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
HCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCEE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLIGPMWSLKKWEVLNAIDKKMKEDN
EEEHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC
LYQGKNFKDK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]