| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ascB [H]
Identifier: 170754806
GI number: 170754806
Start: 992825
End: 994246
Strand: Direct
Name: ascB [H]
Synonym: CLD_3684
Alternate gene names: 170754806
Gene position: 992825-994246 (Clockwise)
Preceding gene: 170757673
Following gene: 170754869
Centisome position: 25.08
GC content: 32.14
Gene sequence:
>1422_bases ATGAGTGGATTAGCAAAGAATTTTTTATGGGGTGGAGCTACAGCAGCTAACCAATGCGAAGGTGGTTATTTAGAAGGAAA TAGAGGATTAGGAACTGTGGACGTTATTCCAGCAGGAGTAAATCGTAGAGCTGTTATGCAAGGAAAGATGCATTATAATA ATTTACAAGAGGATTCTTATTTCCCATCACATGAAGCAATAGATATGTATCATAACTATAAGGAAGATATAGCATTATTT GCAGAAATGGGCTTTAAATGTTATCGTTTCTCATTTTCATGGTCAAGAATTTTCCCAACAGGAAAGGAACAAGAACCAAA TGAAGAAGGCTTAGCATTTTATGAAAAATTTATTGATGAACTATTAAAATATAATATTGAACCAGTAGTTACTATATGTC ACTTTGATGTACCTCTTGCATTGGAGCAGGAATATGGTTCATGGAGAAGTAGAAAATTAATAGATGCATATCTTAGATAT TGTGAAGCAATATTTAAAAGATTTAATGGGAAAGTAAAGTATTGGATGACTTTTAATGAAATAAATATGCTTATGCATTT ACCCTTTATGGGAGCTGGAATAATGTTTGAGGAAGGGGAAAATGAGTTAGAAGTAAAATATCAAGCAGCTCATAATGAAT TAGTGGCATCAGCTTTAGCTACAAAATTAGCAAAGGAAATTAATAAAGATAATAAAATAGGATGCATGTTAGCGGCAGGG CAGTTCTATCCATATACTTGTAAGCCAGAGGATGTTCTAGAGGCTATGGAGAAAGATAAAAATAATTATTTCTTCATAGA TGTACAATCTAGGGGAGAATACCCGAGCTATGCTAAAAAATTCTTAGAGAGAAACAATATAAAAATAGAAATGCAGTCAG AAGATGAGAAGATTTTAAGGGAGAATACTGTTGATTTTATTGCATTCAGTTACTATACTTCAAGACTTGCAAGTAGTGAC CCCAATGCAGGAGAAAAATCAGCTGGTAATGTAATAACATCATTAAAAAATCCACATTTAAAATCTAGTAAATGGGGATG GCAAATAGATCCAATAGGCCTTAGAATTACAATGAATTCACTTTATGATCGTTATCAAAAACCGCTATTCATTGTGGAAA ATGGCTTAGGTGCTGTTGATGTTTTAAATGAAGATGGGACTGTAGATGATGATTATAGAATTGCTTATCTTGAAACTCAT ATAAAAAATATGATTGATGCAGTTGAATTAGATGGTGTTGAACTATTAGGATATACAACTTGGGGATGCATTGATTTAGT TAGTGCATCAACAGGGGAAATGAAAAAGCGATATGGTTTTATATATGTAGATAAGGATAATGATGGTCATGGAACTTTAA AGAGATACAAGAAAAAATCTTTCTATTGGTACAAAAATGTTATTAAAAATAATGGACTATAA
Upstream 100 bases:
>100_bases TAGCAAAATGAAGTGTTTATAAATGTATTATTTATATTTACAGTTTTAAAATTAAAGCTATTTTGAGACAACACCTTATT TAATGAAAGGAAGGTAAAAT
Downstream 100 bases:
>100_bases ATAATTGAAAAAATATATAATATATAAACTTGTAAAAGCAATAGATCCAAAAAATAAGGGAAGATTAGTAATGTAAAATA TTTTAGGTTTTACTGAGGCA
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MSGLAKNFLWGGATAANQCEGGYLEGNRGLGTVDVIPAGVNRRAVMQGKMHYNNLQEDSYFPSHEAIDMYHNYKEDIALF AEMGFKCYRFSFSWSRIFPTGKEQEPNEEGLAFYEKFIDELLKYNIEPVVTICHFDVPLALEQEYGSWRSRKLIDAYLRY CEAIFKRFNGKVKYWMTFNEINMLMHLPFMGAGIMFEEGENELEVKYQAAHNELVASALATKLAKEINKDNKIGCMLAAG QFYPYTCKPEDVLEAMEKDKNNYFFIDVQSRGEYPSYAKKFLERNNIKIEMQSEDEKILRENTVDFIAFSYYTSRLASSD PNAGEKSAGNVITSLKNPHLKSSKWGWQIDPIGLRITMNSLYDRYQKPLFIVENGLGAVDVLNEDGTVDDDYRIAYLETH IKNMIDAVELDGVELLGYTTWGCIDLVSASTGEMKKRYGFIYVDKDNDGHGTLKRYKKKSFYWYKNVIKNNGL
Sequences:
>Translated_473_residues MSGLAKNFLWGGATAANQCEGGYLEGNRGLGTVDVIPAGVNRRAVMQGKMHYNNLQEDSYFPSHEAIDMYHNYKEDIALF AEMGFKCYRFSFSWSRIFPTGKEQEPNEEGLAFYEKFIDELLKYNIEPVVTICHFDVPLALEQEYGSWRSRKLIDAYLRY CEAIFKRFNGKVKYWMTFNEINMLMHLPFMGAGIMFEEGENELEVKYQAAHNELVASALATKLAKEINKDNKIGCMLAAG QFYPYTCKPEDVLEAMEKDKNNYFFIDVQSRGEYPSYAKKFLERNNIKIEMQSEDEKILRENTVDFIAFSYYTSRLASSD PNAGEKSAGNVITSLKNPHLKSSKWGWQIDPIGLRITMNSLYDRYQKPLFIVENGLGAVDVLNEDGTVDDDYRIAYLETH IKNMIDAVELDGVELLGYTTWGCIDLVSASTGEMKKRYGFIYVDKDNDGHGTLKRYKKKSFYWYKNVIKNNGL >Mature_472_residues SGLAKNFLWGGATAANQCEGGYLEGNRGLGTVDVIPAGVNRRAVMQGKMHYNNLQEDSYFPSHEAIDMYHNYKEDIALFA EMGFKCYRFSFSWSRIFPTGKEQEPNEEGLAFYEKFIDELLKYNIEPVVTICHFDVPLALEQEYGSWRSRKLIDAYLRYC EAIFKRFNGKVKYWMTFNEINMLMHLPFMGAGIMFEEGENELEVKYQAAHNELVASALATKLAKEINKDNKIGCMLAAGQ FYPYTCKPEDVLEAMEKDKNNYFFIDVQSRGEYPSYAKKFLERNNIKIEMQSEDEKILRENTVDFIAFSYYTSRLASSDP NAGEKSAGNVITSLKNPHLKSSKWGWQIDPIGLRITMNSLYDRYQKPLFIVENGLGAVDVLNEDGTVDDDYRIAYLETHI KNMIDAVELDGVELLGYTTWGCIDLVSASTGEMKKRYGFIYVDKDNDGHGTLKRYKKKSFYWYKNVIKNNGL
Specific function: Can hydrolyze salicin, cellobiose, and probably arbutin [H]
COG id: COG2723
COG function: function code G; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 1 family [H]
Homologues:
Organism=Homo sapiens, GI32481206, Length=493, Percent_Identity=28.3975659229209, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI13273313, Length=490, Percent_Identity=28.3673469387755, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI110681710, Length=492, Percent_Identity=28.8617886178862, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI24497614, Length=486, Percent_Identity=27.7777777777778, Blast_Score=150, Evalue=4e-36, Organism=Homo sapiens, GI28376633, Length=484, Percent_Identity=26.0330578512397, Blast_Score=149, Evalue=4e-36, Organism=Escherichia coli, GI1789070, Length=472, Percent_Identity=60.3813559322034, Blast_Score=622, Evalue=1e-179, Organism=Escherichia coli, GI2367174, Length=480, Percent_Identity=51.875, Blast_Score=515, Evalue=1e-147, Organism=Escherichia coli, GI2367270, Length=473, Percent_Identity=51.7970401691332, Blast_Score=512, Evalue=1e-146, Organism=Caenorhabditis elegans, GI17552856, Length=489, Percent_Identity=30.2658486707566, Blast_Score=171, Evalue=5e-43, Organism=Caenorhabditis elegans, GI17539390, Length=493, Percent_Identity=28.3975659229209, Blast_Score=157, Evalue=9e-39, Organism=Drosophila melanogaster, GI21356577, Length=470, Percent_Identity=25.3191489361702, Blast_Score=137, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001360 - InterPro: IPR018120 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00232 Glyco_hydro_1 [H]
EC number: =3.2.1.86 [H]
Molecular weight: Translated: 54364; Mature: 54233
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00572 GLYCOSYL_HYDROL_F1_1 ; PS00653 GLYCOSYL_HYDROL_F1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLAKNFLWGGATAANQCEGGYLEGNRGLGTVDVIPAGVNRRAVMQGKMHYNNLQEDSY CCCCHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCEEEECCHHCCCCCCCCC FPSHEAIDMYHNYKEDIALFAEMGFKCYRFSFSWSRIFPTGKEQEPNEEGLAFYEKFIDE CCCCHHHHHHHCHHHHHHHHHHCCCEEEEEEEEHHEECCCCCCCCCCHHHHHHHHHHHHH LLKYNIEPVVTICHFDVPLALEQEYGSWRSRKLIDAYLRYCEAIFKRFNGKVKYWMTFNE HHHCCCCEEEEEEECCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH INMLMHLPFMGAGIMFEEGENELEVKYQAAHNELVASALATKLAKEINKDNKIGCMLAAG HCEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC QFYPYTCKPEDVLEAMEKDKNNYFFIDVQSRGEYPSYAKKFLERNNIKIEMQSEDEKILR CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHH ENTVDFIAFSYYTSRLASSDPNAGEKSAGNVITSLKNPHLKSSKWGWQIDPIGLRITMNS HCCHHHEEHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCEEEEEEHHH LYDRYQKPLFIVENGLGAVDVLNEDGTVDDDYRIAYLETHIKNMIDAVELDGVELLGYTT HHHHHCCCEEEEECCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEECH WGCIDLVSASTGEMKKRYGFIYVDKDNDGHGTLKRYKKKSFYWYKNVIKNNGL HHHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SGLAKNFLWGGATAANQCEGGYLEGNRGLGTVDVIPAGVNRRAVMQGKMHYNNLQEDSY CCCHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCEEEECCHHCCCCCCCCC FPSHEAIDMYHNYKEDIALFAEMGFKCYRFSFSWSRIFPTGKEQEPNEEGLAFYEKFIDE CCCCHHHHHHHCHHHHHHHHHHCCCEEEEEEEEHHEECCCCCCCCCCHHHHHHHHHHHHH LLKYNIEPVVTICHFDVPLALEQEYGSWRSRKLIDAYLRYCEAIFKRFNGKVKYWMTFNE HHHCCCCEEEEEEECCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH INMLMHLPFMGAGIMFEEGENELEVKYQAAHNELVASALATKLAKEINKDNKIGCMLAAG HCEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC QFYPYTCKPEDVLEAMEKDKNNYFFIDVQSRGEYPSYAKKFLERNNIKIEMQSEDEKILR CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHH ENTVDFIAFSYYTSRLASSDPNAGEKSAGNVITSLKNPHLKSSKWGWQIDPIGLRITMNS HCCHHHEEHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCEEEEEEHHH LYDRYQKPLFIVENGLGAVDVLNEDGTVDDDYRIAYLETHIKNMIDAVELDGVELLGYTT HHHHHCCCEEEEECCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEECH WGCIDLVSASTGEMKKRYGFIYVDKDNDGHGTLKRYKKKSFYWYKNVIKNNGL HHHHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1630307; 9278503 [H]