| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754804
Identifier: 170754804
GI number: 170754804
Start: 1879255
End: 1879674
Strand: Reverse
Name: 170754804
Synonym: CLD_2868
Alternate gene names: NA
Gene position: 1879674-1879255 (Counterclockwise)
Preceding gene: 170754707
Following gene: 170755816
Centisome position: 47.49
GC content: 23.33
Gene sequence:
>420_bases ATGGATAACAAAAATAATAAAAAAGATATTGCTATAGAAGATATAGAGGATATAGAAAATATAGATAGTTTAATAAGCTT ATCTGATGATTGTATAGAAAAAACATTAACTAGGATAAGAAGTATAAACGCTTTAAGAGATGAACTAATTAAACTCAATT TAAATCCAGAAGGGTTAATTTATTTTAATAATGAAGTTTATCCTTTACTTTATACTTTAACAAATCTTAGCACCACTTCT CTAAATCTATCTACTTCTGCTAATTTTCTATCAACTGCTGTATATTTAAAGCCTAAGGATTCTAAAATTAAGGATACTGT TAAATTAATCTATGAAATGACTGAGCAATGTGAAGATATATATGATTCTTTAAAATATAAAATAGATACTCTTATATGTA TATCTAAAAAATCCAAATAA
Upstream 100 bases:
>100_bases ATTCTATAATTAATATATTATTTCTGTTTTATTAATATTTTTCTCTTTTTCATAATAGCTATATATAAATATCAATTTTA GAATGGATAATTTAATAATT
Downstream 100 bases:
>100_bases AGGGCTACATCTATTAAATAAGATTTAAGATGTAGCCTATTTAATAGGATCTTCTCCATATCCAGCCTTTTCATACTTGT AATCTGGAAATTTCAAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MDNKNNKKDIAIEDIEDIENIDSLISLSDDCIEKTLTRIRSINALRDELIKLNLNPEGLIYFNNEVYPLLYTLTNLSTTS LNLSTSANFLSTAVYLKPKDSKIKDTVKLIYEMTEQCEDIYDSLKYKIDTLICISKKSK
Sequences:
>Translated_139_residues MDNKNNKKDIAIEDIEDIENIDSLISLSDDCIEKTLTRIRSINALRDELIKLNLNPEGLIYFNNEVYPLLYTLTNLSTTS LNLSTSANFLSTAVYLKPKDSKIKDTVKLIYEMTEQCEDIYDSLKYKIDTLICISKKSK >Mature_139_residues MDNKNNKKDIAIEDIEDIENIDSLISLSDDCIEKTLTRIRSINALRDELIKLNLNPEGLIYFNNEVYPLLYTLTNLSTTS LNLSTSANFLSTAVYLKPKDSKIKDTVKLIYEMTEQCEDIYDSLKYKIDTLICISKKSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15950; Mature: 15950
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNKNNKKDIAIEDIEDIENIDSLISLSDDCIEKTLTRIRSINALRDELIKLNLNPEGLI CCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE YFNNEVYPLLYTLTNLSTTSLNLSTSANFLSTAVYLKPKDSKIKDTVKLIYEMTEQCEDI EECCCCEEEHHHHHCCCEEEEECCCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH YDSLKYKIDTLICISKKSK HHHHHHHHHHEEEEECCCC >Mature Secondary Structure MDNKNNKKDIAIEDIEDIENIDSLISLSDDCIEKTLTRIRSINALRDELIKLNLNPEGLI CCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE YFNNEVYPLLYTLTNLSTTSLNLSTSANFLSTAVYLKPKDSKIKDTVKLIYEMTEQCEDI EECCCCEEEHHHHHCCCEEEEECCCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH YDSLKYKIDTLICISKKSK HHHHHHHHHHEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA