| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754783
Identifier: 170754783
GI number: 170754783
Start: 2110565
End: 2111380
Strand: Reverse
Name: 170754783
Synonym: CLD_2655
Alternate gene names: NA
Gene position: 2111380-2110565 (Counterclockwise)
Preceding gene: 170757247
Following gene: 170755155
Centisome position: 53.34
GC content: 34.07
Gene sequence:
>816_bases ATGCCGTTTAAACATGAAAAAATTATTTATGGATTTCCGCAGGATCCATATGATAATAGTATTATTAAAGAATTATGTGA AGATATTAACTGTGCATTAAATTTTAGTAGAAAACCTGTAGGTATAAAATTATATTTTGACAAAGAAGAATATAGTAAAT TAGAATGGAAGGAACCTAATGCACCGTTATCTTATTGCTGTGTAGTAGAAAAAGCTACTAGAGGGAAAGCATTTAAAATA AGACTTGAACATTTAAGTTGTGATGGAGGTACTACTGCCCTAAATTTAGAACCTTCCACAGAAAGAATAGAGTCTGGTGC AGAATATTTTTCTTACAATTTATATAAAACACCGGCTGCAGCGAGAAGGGTAAGGGAAGGTGTACCCGGATTATATAGGA CAGGAGCCACTACATATGGAGTGGCAGTGGGACCTTTAGAAGAATTTGAAACTACTCCAGATGTGGTTATTTTTATCGTA AATCCTTATCAAGCTATGAGAATTCAGCAAGGATATGTATATCATGAAGGTGGAAGATTGGAAATCACAGGCGCTTCAAT GCAAGCAATTTGTGCAGAAGCAACTGTAGAGCCTTATATAAAAGGTAGACTAAATACCACAGTTCTTTGTCCAAGCACTA GATTTTTAGCAAAATGGAAGGACGAAGAGATGGCAATAGGAATCCCTTTTGAAAGATTTCAAAGTGTGGTAGAAGGAGTA ATAGCTACCATAAATACTACAGATATTAAGCGTAGAAAAGATGAGATAAAGCAAAGATTTGCTAAAAAGAATAAGGAAAT AAATTTAGAGTATTAG
Upstream 100 bases:
>100_bases ATTTTATATATTATTTCTGTTGCAGTTATGCTTTATTTAAATAATCTTGTTACTTTTTCTGTTAAGTATATATAATAATA AAACATTGGAGGGATAAAGT
Downstream 100 bases:
>100_bases TATTGTTAATACTAATATAAACAAGGAAGAGGTTGTTTTAAAATAAAATGTGTTTTGAGACAACTTCTTCCTTATTTATG TTAAATATAGTTAATTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MPFKHEKIIYGFPQDPYDNSIIKELCEDINCALNFSRKPVGIKLYFDKEEYSKLEWKEPNAPLSYCCVVEKATRGKAFKI RLEHLSCDGGTTALNLEPSTERIESGAEYFSYNLYKTPAAARRVREGVPGLYRTGATTYGVAVGPLEEFETTPDVVIFIV NPYQAMRIQQGYVYHEGGRLEITGASMQAICAEATVEPYIKGRLNTTVLCPSTRFLAKWKDEEMAIGIPFERFQSVVEGV IATINTTDIKRRKDEIKQRFAKKNKEINLEY
Sequences:
>Translated_271_residues MPFKHEKIIYGFPQDPYDNSIIKELCEDINCALNFSRKPVGIKLYFDKEEYSKLEWKEPNAPLSYCCVVEKATRGKAFKI RLEHLSCDGGTTALNLEPSTERIESGAEYFSYNLYKTPAAARRVREGVPGLYRTGATTYGVAVGPLEEFETTPDVVIFIV NPYQAMRIQQGYVYHEGGRLEITGASMQAICAEATVEPYIKGRLNTTVLCPSTRFLAKWKDEEMAIGIPFERFQSVVEGV IATINTTDIKRRKDEIKQRFAKKNKEINLEY >Mature_270_residues PFKHEKIIYGFPQDPYDNSIIKELCEDINCALNFSRKPVGIKLYFDKEEYSKLEWKEPNAPLSYCCVVEKATRGKAFKIR LEHLSCDGGTTALNLEPSTERIESGAEYFSYNLYKTPAAARRVREGVPGLYRTGATTYGVAVGPLEEFETTPDVVIFIVN PYQAMRIQQGYVYHEGGRLEITGASMQAICAEATVEPYIKGRLNTTVLCPSTRFLAKWKDEEMAIGIPFERFQSVVEGVI ATINTTDIKRRKDEIKQRFAKKNKEINLEY
Specific function: Unknown
COG id: COG2043
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003748 [H]
Pfam domain/function: PF02596 DUF169 [H]
EC number: NA
Molecular weight: Translated: 30826; Mature: 30694
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFKHEKIIYGFPQDPYDNSIIKELCEDINCALNFSRKPVGIKLYFDKEEYSKLEWKEPN CCCCCCEEEEECCCCCCCCHHHHHHHHHHHEEEECCCCCEEEEEEECHHHHCCCCCCCCC APLSYCCVVEKATRGKAFKIRLEHLSCDGGTTALNLEPSTERIESGAEYFSYNLYKTPAA CCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHHCCHHHEEEEEEECCHH ARRVREGVPGLYRTGATTYGVAVGPLEEFETTPDVVIFIVNPYQAMRIQQGYVYHEGGRL HHHHHHCCCCHHHCCCCEEEEEECCHHHHCCCCCEEEEEECCHHHEEEECCEEEECCCEE EITGASMQAICAEATVEPYIKGRLNTTVLCPSTRFLAKWKDEEMAIGIPFERFQSVVEGV EEECCHHHHHHHHCCCCHHHCCCCCEEEECCCCHHHEECCCCCEEEECCHHHHHHHHHHH IATINTTDIKRRKDEIKQRFAKKNKEINLEY HHHCCCHHHHHHHHHHHHHHHHCCCCEEECC >Mature Secondary Structure PFKHEKIIYGFPQDPYDNSIIKELCEDINCALNFSRKPVGIKLYFDKEEYSKLEWKEPN CCCCCEEEEECCCCCCCCHHHHHHHHHHHEEEECCCCCEEEEEEECHHHHCCCCCCCCC APLSYCCVVEKATRGKAFKIRLEHLSCDGGTTALNLEPSTERIESGAEYFSYNLYKTPAA CCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCHHHHHCCHHHEEEEEEECCHH ARRVREGVPGLYRTGATTYGVAVGPLEEFETTPDVVIFIVNPYQAMRIQQGYVYHEGGRL HHHHHHCCCCHHHCCCCEEEEEECCHHHHCCCCCEEEEEECCHHHEEEECCEEEECCCEE EITGASMQAICAEATVEPYIKGRLNTTVLCPSTRFLAKWKDEEMAIGIPFERFQSVVEGV EEECCHHHHHHHHCCCCHHHCCCCCEEEECCCCHHHEECCCCCEEEECCHHHHHHHHHHH IATINTTDIKRRKDEIKQRFAKKNKEINLEY HHHCCCHHHHHHHHHHHHHHHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]