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The map label for this gene is patM [H]

Identifier: 170754761

GI number: 170754761

Start: 1567992

End: 1568657

Strand: Direct

Name: patM [H]

Synonym: CLD_3136

Alternate gene names: 170754761

Gene position: 1567992-1568657 (Clockwise)

Preceding gene: 170756070

Following gene: 170754396

Centisome position: 39.61

GC content: 30.78

Gene sequence:

>666_bases
ATGATTTTTGACCTAGAATATTTTAATAAATTAGTGCCTTTAATGCTTAAACATTTGAAAGTTACTTTTATAATTTCTTT
TTTAGCATTGATTTTAGGATTAATTCTTGCTATATTTATAGCAGTAATTAATGAATTAAAAATCAAAGTCCTTTATAGTA
TAAGTAAAATATGGGTATCCTTTTTTAGAGGGACTCCTTTAATTGCTCAATTGTTCTTTTTATATTTTGGTATAGTTCAA
TTAATACCTAGTTTAAAAAATATGGATGCTATGACTGCAGCCATTATAGGCTTAGGGTTTAATGCCTCAGCTTATATGTC
AGAAACATTAAGAGGAGCTATTTCTTCTGTAGATAAAGGGCAAATAGAGGCAAGTTTATCTATAGGAATGACACCAATTC
AATCCATGAAGAGAATAGCATTTCCACAGGCTGCTAGGGTAGCGCTGCCAGCTCTATCCAATAGCTTTGTAGATATTATA
AAGGGTTCTGCATTAGCTTTTACTTTAGGGGTAGTAGAGATAATGGCGGTGGCACAAAGTGAGGGAGCATCTAGTTATAG
ATTTTTAGAATCTTTTACTGCAGTAATAATTATTTACTGGATTATAATTAGTGCCTTCGGATATTTGCAAAATATACTAG
AAAGAAGAATGAATAATGTTTATTAG

Upstream 100 bases:

>100_bases
TAAAGCTATAAAGGATATGATGGCTGATGGTACAATGAGTAAACTATCACAAAAGTGGTTTAAACTTGATATAACTAAGA
AGGAATAGGTGTGGTAGTAT

Downstream 100 bases:

>100_bases
TAAGGTTGGTGAAAACATATGATAAAAATAAGTAATTTACATAAATCTTTTAATGGAGTAGAAGTATTAAAGGGAATAAA
TTTAGATATAAAAAAAGGTG

Product: His/Glu/Gln/Arg/opine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIFDLEYFNKLVPLMLKHLKVTFIISFLALILGLILAIFIAVINELKIKVLYSISKIWVSFFRGTPLIAQLFFLYFGIVQ
LIPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKGQIEASLSIGMTPIQSMKRIAFPQAARVALPALSNSFVDII
KGSALAFTLGVVEIMAVAQSEGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY

Sequences:

>Translated_221_residues
MIFDLEYFNKLVPLMLKHLKVTFIISFLALILGLILAIFIAVINELKIKVLYSISKIWVSFFRGTPLIAQLFFLYFGIVQ
LIPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKGQIEASLSIGMTPIQSMKRIAFPQAARVALPALSNSFVDII
KGSALAFTLGVVEIMAVAQSEGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY
>Mature_221_residues
MIFDLEYFNKLVPLMLKHLKVTFIISFLALILGLILAIFIAVINELKIKVLYSISKIWVSFFRGTPLIAQLFFLYFGIVQ
LIPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKGQIEASLSIGMTPIQSMKRIAFPQAARVALPALSNSFVDII
KGSALAFTLGVVEIMAVAQSEGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=44.0758293838863, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=31.1926605504587, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786874, Length=209, Percent_Identity=29.6650717703349, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787086, Length=213, Percent_Identity=29.1079812206573, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788645, Length=189, Percent_Identity=30.1587301587302, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788646, Length=167, Percent_Identity=31.1377245508982, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=27.8538812785388, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=25, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787087, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=232, Percent_Identity=25.8620689655172, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24497; Mature: 24497

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFDLEYFNKLVPLMLKHLKVTFIISFLALILGLILAIFIAVINELKIKVLYSISKIWVS
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRGTPLIAQLFFLYFGIVQLIPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKG
HHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
QIEASLSIGMTPIQSMKRIAFPQAARVALPALSNSFVDIIKGSALAFTLGVVEIMAVAQS
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
EGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIFDLEYFNKLVPLMLKHLKVTFIISFLALILGLILAIFIAVINELKIKVLYSISKIWVS
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRGTPLIAQLFFLYFGIVQLIPSLKNMDAMTAAIIGLGFNASAYMSETLRGAISSVDKG
HHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
QIEASLSIGMTPIQSMKRIAFPQAARVALPALSNSFVDIIKGSALAFTLGVVEIMAVAQS
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
EGASSYRFLESFTAVIIIYWIIISAFGYLQNILERRMNNVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA