| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754636
Identifier: 170754636
GI number: 170754636
Start: 515089
End: 516450
Strand: Reverse
Name: 170754636
Synonym: CLD_0339
Alternate gene names: NA
Gene position: 516450-515089 (Counterclockwise)
Preceding gene: 170756756
Following gene: 170755869
Centisome position: 13.05
GC content: 26.87
Gene sequence:
>1362_bases GTGTGTAAAATTAATATAAAATCTTTTTTCAGCATAATAATTTCAAAAATGGTTCTAAAGCTGTCTAAAACACTTTTTAA AGGTGGAACCAACTTCCCGGGAAAAGTTGCTTTAAAATTAGATAAAAAAATATTAAAAACAATAGCTAAGGATTACAAAG TAATCCTTGTAACAGGAACTAATGGTAAAACCACCACAACTAGTATGATATACAATATGATTAAAGACAGTAATAAATTT GTAATATCCAACAGTACTGGTGCAAATATGTTTCCAGGCATAGTAGCTTGTTTTGTAGAAAACTTTTCTTTCAATAATAA AGAAGAAAAATATGCGGTTATAGAAGTAGATGAAGCCAATGTGAAATTTATTACAGAATATGTATCTCCAGAAATAATAA CTATAACAAACCTATTTAGAGATCAACTAGATAGGTATGGAGAAGTTTATACTACTTTAAAAAAAATATTAGAGGGTATT GAAAAATCTCCAAATTCAAAACTTATATTAAATGGGGACGAGTCACTTTTAGGTGATTTAAATAATTCTCTTCCTAATAA AGTTCTATATTATGGATTTTCACATTTTAAAAATGCTGATACTGTAATAGATGTAAATGCAGATTCAAAATTTTGTAAAA AGTGTAAACATCCTTATTCTTATGAATTTTTAACTTATAATCATTTAGGAAGCTACTACTGTGAACACTGCGGATATAAA AGACCTAATATAACCTTCTCTTTAGATGAAGTAGAAGATTTAACCCCTGAGGGTTCTTTAGTTATAATAGATAATCAAGA ATACTACATAAATCAACCTGGACTATATAATGTTTATAATGCCCTATGTGCTTATTCTATGGCTAAAACATTAGGTATAG AAAAATCTATCATATTTAATTCATTAAAGAGTCAAAAGAGTAGTTTTGGTAGACAAGAAAGTATAAATATAGAAGGTAAG GATGTTAAAATAATACTAGTTAAGAATCCTGCTGGATATGACCAAGCTATAAATACTATAGTTTTAGACAAGAAAAAATT AAATTTAGCCCTACTTTTAAATGATAACTATGCAGATGGTAGAGATGTATCTTGGATATGGGATGTAAAATTTGAAAAAT TAAAATCTCTAGATATAGATAATATATTAATCTCTGGTGTAAGATTATACGACATGGCTATAAGATTAAAAATAGCAGGT CTCCCAAATGAAAAATTTAAAATTTCTCAAAATCATGATAATTTATTAGAGGATATAAAAAGTTGCAAAGAAGAGACCGT ATATATTTTAGCTACATATACTGCTATGACATCTTTTAGAAAATTTCTAAATTCTAAAGGATATATTAAAAAGTTGTGGT AA
Upstream 100 bases:
>100_bases AAAAATTAAATTATGATTTTATTAATATTAATGTAAAATAGTCAAAATTATATTATAATAGTTAGTTGTAATCTTATTTA TTTAAAAATTTAAAAAGGAA
Downstream 100 bases:
>100_bases TTAATATATAAAGCAATTAAATTAGGTATTCTAACTAATATAAAGAAGGTGAAATACATGGAACTTAATATATGTCACCT ATACCCTGATTTATTAAATG
Product: UDP-N-acetylmuramyl tripeptide synthetase-like protein
Products: NA
Alternate protein names: Mur Ligase Family Protein; UDP-N-Acetylmuramyl Tripeptide Synthetase; Mur Ligase; Ligase; UDP-N-Acetylmuramoylalanine-D-Glutamate Ligase; Mur Ligase Middle Domain Protein; Conserved Domain Protein; UDP-N-Acetylmuramyl Tripeptide Synthase-Like Protein; UDP-N-Acetylmuramyl Tripeptide Synthetase MurC; Peptide Ligase; UDP-N-Acetylmuramyl Tripeptide Synthetase Like; Murein Ligase; UDP-N-Acetylmuramoyl-L-Alanyl-D-Glutamate-Lysine Ligase; Udp-N-Acetylmuramyl Tripeptide Synthetase; Cell Wall Biosynthesis Protein Mur Ligase Family; UDP-N-Acetylmuramyl Tripeptide Synthetase Related Protein; Mur Ligase Middle Domain-Containing Protein; UDP-N-Acetylmuramyl Peptide Synthetase
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MCKINIKSFFSIIISKMVLKLSKTLFKGGTNFPGKVALKLDKKILKTIAKDYKVILVTGTNGKTTTTSMIYNMIKDSNKF VISNSTGANMFPGIVACFVENFSFNNKEEKYAVIEVDEANVKFITEYVSPEIITITNLFRDQLDRYGEVYTTLKKILEGI EKSPNSKLILNGDESLLGDLNNSLPNKVLYYGFSHFKNADTVIDVNADSKFCKKCKHPYSYEFLTYNHLGSYYCEHCGYK RPNITFSLDEVEDLTPEGSLVIIDNQEYYINQPGLYNVYNALCAYSMAKTLGIEKSIIFNSLKSQKSSFGRQESINIEGK DVKIILVKNPAGYDQAINTIVLDKKKLNLALLLNDNYADGRDVSWIWDVKFEKLKSLDIDNILISGVRLYDMAIRLKIAG LPNEKFKISQNHDNLLEDIKSCKEETVYILATYTAMTSFRKFLNSKGYIKKLW
Sequences:
>Translated_453_residues MCKINIKSFFSIIISKMVLKLSKTLFKGGTNFPGKVALKLDKKILKTIAKDYKVILVTGTNGKTTTTSMIYNMIKDSNKF VISNSTGANMFPGIVACFVENFSFNNKEEKYAVIEVDEANVKFITEYVSPEIITITNLFRDQLDRYGEVYTTLKKILEGI EKSPNSKLILNGDESLLGDLNNSLPNKVLYYGFSHFKNADTVIDVNADSKFCKKCKHPYSYEFLTYNHLGSYYCEHCGYK RPNITFSLDEVEDLTPEGSLVIIDNQEYYINQPGLYNVYNALCAYSMAKTLGIEKSIIFNSLKSQKSSFGRQESINIEGK DVKIILVKNPAGYDQAINTIVLDKKKLNLALLLNDNYADGRDVSWIWDVKFEKLKSLDIDNILISGVRLYDMAIRLKIAG LPNEKFKISQNHDNLLEDIKSCKEETVYILATYTAMTSFRKFLNSKGYIKKLW >Mature_453_residues MCKINIKSFFSIIISKMVLKLSKTLFKGGTNFPGKVALKLDKKILKTIAKDYKVILVTGTNGKTTTTSMIYNMIKDSNKF VISNSTGANMFPGIVACFVENFSFNNKEEKYAVIEVDEANVKFITEYVSPEIITITNLFRDQLDRYGEVYTTLKKILEGI EKSPNSKLILNGDESLLGDLNNSLPNKVLYYGFSHFKNADTVIDVNADSKFCKKCKHPYSYEFLTYNHLGSYYCEHCGYK RPNITFSLDEVEDLTPEGSLVIIDNQEYYINQPGLYNVYNALCAYSMAKTLGIEKSIIFNSLKSQKSSFGRQESINIEGK DVKIILVKNPAGYDQAINTIVLDKKKLNLALLLNDNYADGRDVSWIWDVKFEKLKSLDIDNILISGVRLYDMAIRLKIAG LPNEKFKISQNHDNLLEDIKSCKEETVYILATYTAMTSFRKFLNSKGYIKKLW
Specific function: Unknown
COG id: COG0769
COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51534; Mature: 51534
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: PS01011 FOLYLPOLYGLU_SYNT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKINIKSFFSIIISKMVLKLSKTLFKGGTNFPGKVALKLDKKILKTIAKDYKVILVTGT CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECC NGKTTTTSMIYNMIKDSNKFVISNSTGANMFPGIVACFVENFSFNNKEEKYAVIEVDEAN CCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC VKFITEYVSPEIITITNLFRDQLDRYGEVYTTLKKILEGIEKSPNSKLILNGDESLLGDL CEEEEHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH NNSLPNKVLYYGFSHFKNADTVIDVNADSKFCKKCKHPYSYEFLTYNHLGSYYCEHCGYK HCCCCCCEEEECHHHCCCCCEEEEECCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCC RPNITFSLDEVEDLTPEGSLVIIDNQEYYINQPGLYNVYNALCAYSMAKTLGIEKSIIFN CCCEEEEHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH SLKSQKSSFGRQESINIEGKDVKIILVKNPAGYDQAINTIVLDKKKLNLALLLNDNYADG HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHEEEEECCCCEEEEEEECCCCCC RDVSWIWDVKFEKLKSLDIDNILISGVRLYDMAIRLKIAGLPNEKFKISQNHDNLLEDIK CCCEEEECCCHHHHHCCCCCHHHHCCEEEEEEEEEEEEECCCCCCEEEECCHHHHHHHHH SCKEETVYILATYTAMTSFRKFLNSKGYIKKLW HHHHCEEEEEEEHHHHHHHHHHHCCCCCEEECC >Mature Secondary Structure MCKINIKSFFSIIISKMVLKLSKTLFKGGTNFPGKVALKLDKKILKTIAKDYKVILVTGT CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCEEEEEECC NGKTTTTSMIYNMIKDSNKFVISNSTGANMFPGIVACFVENFSFNNKEEKYAVIEVDEAN CCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC VKFITEYVSPEIITITNLFRDQLDRYGEVYTTLKKILEGIEKSPNSKLILNGDESLLGDL CEEEEHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH NNSLPNKVLYYGFSHFKNADTVIDVNADSKFCKKCKHPYSYEFLTYNHLGSYYCEHCGYK HCCCCCCEEEECHHHCCCCCEEEEECCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCC RPNITFSLDEVEDLTPEGSLVIIDNQEYYINQPGLYNVYNALCAYSMAKTLGIEKSIIFN CCCEEEEHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH SLKSQKSSFGRQESINIEGKDVKIILVKNPAGYDQAINTIVLDKKKLNLALLLNDNYADG HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHEEEEECCCCEEEEEEECCCCCC RDVSWIWDVKFEKLKSLDIDNILISGVRLYDMAIRLKIAGLPNEKFKISQNHDNLLEDIK CCCEEEECCCHHHHHCCCCCHHHHCCEEEEEEEEEEEEECCCCCCEEEECCHHHHHHHHH SCKEETVYILATYTAMTSFRKFLNSKGYIKKLW HHHHCEEEEEEEHHHHHHHHHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA