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The map label for this gene is oppA [H]

Identifier: 170754475

GI number: 170754475

Start: 3411982

End: 3413664

Strand: Reverse

Name: oppA [H]

Synonym: CLD_1386

Alternate gene names: 170754475

Gene position: 3413664-3411982 (Counterclockwise)

Preceding gene: 170755527

Following gene: 170756633

Centisome position: 86.24

GC content: 31.37

Gene sequence:

>1683_bases
GTGAAAAGTAAAAGGTTATTGGCAGCTTTAGTATCTTGTGTGGTTTTAACTTCGGTAGCATTAGCAGGATGTGGAGGAAA
GGAAACTGCATCAGGAAGTAAAGGTGCAGATAAAGAACAATATCTAAATATGATTTTGCAGGAAGAACCTAAAAGTTTAG
ACCCAGCTAAATCAACAGACTTGTATTCTTCACAGGTTATCTCTGAGGTTTATGATGGATTAACAAGATTGGAAGTAGAT
GAAAAAGGTAAAGATGTAGTTAAACCAGCAGGAGCAGAAAAATGGGATGTATCTGAGGATGGATTAAAATGGACTTTTCA
TTTAAGAGATTATGAGTGGTCTGATGGAAAGAAGGTTACTGCAAAGGATTATGAATATGGTATAAAAAGAAACTTAGATC
CTAAAACTGCATCAGAGTATGCTTACTTATTAGCTCCAATAAAAAATGCGAACGAATATAATGCAGGGAAAGCAAAAGCT
GAAGAAGTTGGAGTAAAAGCTTTAGATGATAAAACTTTAGAAATAACTTTAGCTGGACCTTGTGCATATTTCTTAAAGAT
AACATATTTTAAATTAATGATGCCACAAAGACAGGATATAGTTGAAAAGTATGGAGAAAAATTTGGTACAGAAGCTTCTA
ATATGGTATTCTGTGGACCTTTTACCATAAAGGAATGGGTACATGCAAACAAAATGGAATTAGTTAAAAATGAAAAATAT
TGGGATGCTAAATCTGTTAAATTAAATAACGTTCATATGAAAATTATAAATAATGAAGCTGCTAGAATGCAAGAGCTTCT
AAATGGAGGAATAGATTTCAGTAATGTTCAAAAGCCAGAGTGGAAAGAAAAGTTCAAAAAAGCTGATAAATTTGAAGTGA
AAAAAGTTATTGAACCAGCAACAAATATTGAATTCTTTAATCAAAATGTTAAATTATTTAGTAATGCTAAAGTAAGAAAA
GCTTTTTCTTTAGCAGTTAATAGAGAAGAGGTTTCAAAAACTTTATTTAAAAATGATTTTACACCAGCTTATGGGTTTGT
GCCACCTTCATTACAAATAGGATATAAGGAATTTAGAAAAGAAGTAGGAGAAGAACCAATTAAGAAATTAAAAGAAGAAA
ATCAAGATCCAAAGAAACTTTTAATTGAAGGATTAAAAGAATTAGGAATGGATCCGGATCCAAGTAAAGTAACAGTAAAT
TATTTAACAGGCTCTACAAGTGATCAACAAAAAGAAATTTGCGAATTTTTCCAAGAGATGTATCAAAAAGCTTTGGGGGT
TAAAGTAAATATAGAATATGTTCAATGGCCAGTATACATGAAGAGAATAAATAATGCGGAATATGAAATATCAGGTATGG
CTTGGACAGGAGATTATGATGATCCTATGACAGAATTTGATTTGTGGATGACTGGGGCCAAAGCGCTTCCAACAAATTAC
TCAAATACAAAATATGATGAATTAATTAAAAAAGCTGCATTACTACCAGAAGAAAAGAATGAAGAAAGAATGAAACTGTT
TAAAGAAGCTGAACAAATATTATTATATGAAGATGCTGTAATAGCACCAGCAGTTTATAGAGCTAGAAATATTTATCAAA
GAAAATATGTAAAGGGAATAATGGTTCCACAATTCGGTTCTTTATATGATGTTAAATATGCCCATACGGAAGGTAGGGAG
TAA

Upstream 100 bases:

>100_bases
AGAAAACATATTTGAAATATAGTTGTTTTAAAATAATTTTTATTGGAAATAAGTGGATTTACACTTGTTTTTTATAAAAT
AACTTAAAGGGGGAAGTTTA

Downstream 100 bases:

>100_bases
TAGTATGATTTTATGCAGCAGAGCCTTTTAATGGCTCTGCTGTTATAAGTTACATAAAAATATATTGGGGAGGGATAAAG
ATGTTTAAGTATATCTTAAA

Product: oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein

Products: NA

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTDLYSSQVISEVYDGLTRLEVD
EKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVTAKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKA
EEVGVKALDDKTLEITLAGPCAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPATNIEFFNQNVKLFSNAKVRK
AFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGYKEFRKEVGEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVN
YLTGSTSDQQKEICEFFQEMYQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGIMVPQFGSLYDVKYAHTEGRE

Sequences:

>Translated_560_residues
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTDLYSSQVISEVYDGLTRLEVD
EKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVTAKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKA
EEVGVKALDDKTLEITLAGPCAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPATNIEFFNQNVKLFSNAKVRK
AFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGYKEFRKEVGEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVN
YLTGSTSDQQKEICEFFQEMYQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGIMVPQFGSLYDVKYAHTEGRE
>Mature_560_residues
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTDLYSSQVISEVYDGLTRLEVD
EKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVTAKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKA
EEVGVKALDDKTLEITLAGPCAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPATNIEFFNQNVKLFSNAKVRK
AFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGYKEFRKEVGEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVN
YLTGSTSDQQKEICEFFQEMYQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGIMVPQFGSLYDVKYAHTEGRE

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=552, Percent_Identity=30.0724637681159, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1787495, Length=545, Percent_Identity=29.3577981651376, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1789397, Length=500, Percent_Identity=28, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1789966, Length=499, Percent_Identity=26.0521042084168, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1787052, Length=518, Percent_Identity=25.4826254826255, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787762, Length=514, Percent_Identity=22.7626459143969, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1787551, Length=519, Percent_Identity=22.3506743737958, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63978; Mature: 63978

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
LYSSQVISEVYDGLTRLEVDEKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVT
HHHHHHHHHHHCCHHEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEEEECEECCCCCEEE
AKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKAEEVGVKALDDKTLEITLAGP
CCHHHHHCCCCCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCH
CAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCC
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPA
CCCCCEEECCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
TNIEFFNQNVKLFSNAKVRKAFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGYKEFRK
CCHHHHCCCEEEECCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHH
EVGEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVNYLTGSTSDQQKEICEFFQEM
HHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
YQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
HHHHCCEEEEEEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGI
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
MVPQFGSLYDVKYAHTEGRE
CCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
LYSSQVISEVYDGLTRLEVDEKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVT
HHHHHHHHHHHCCHHEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEEEECEECCCCCEEE
AKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKAEEVGVKALDDKTLEITLAGP
CCHHHHHCCCCCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCH
CAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCC
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPA
CCCCCEEECCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
TNIEFFNQNVKLFSNAKVRKAFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGYKEFRK
CCHHHHCCCEEEECCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHH
EVGEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVNYLTGSTSDQQKEICEFFQEM
HHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
YQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
HHHHCCEEEEEEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGI
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
MVPQFGSLYDVKYAHTEGRE
CCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]