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The map label for this gene is 170754474

Identifier: 170754474

GI number: 170754474

Start: 869205

End: 869597

Strand: Direct

Name: 170754474

Synonym: CLD_0013

Alternate gene names: NA

Gene position: 869205-869597 (Clockwise)

Preceding gene: 170754243

Following gene: 170755517

Centisome position: 21.96

GC content: 27.99

Gene sequence:

>393_bases
ATGTATAATTTACTTGAAAAATATAGAAATGGTGATATGGGCGCTTTAAATGAAATTATAGAAAATTTTAATCCACTTAT
ATTGAAAGAGGCCTCAAAATGGAGAATAGGATGTTATGAGTATGAAGATTTGGTACAACATGGCTATCTTTCAGTTATAA
AGGTTGTTAATATGTTTAAAGGTGAAGAAAGTAAGTTTGTTCCCTATTGTATAAATGCAATTAAAACAAATTATAAAGCT
CTCTTAAAAGGAGAGATAAAGCACCATAGAGAAATACCGGATGAAAATATATTAAATAAAGGCAATGAATATATGTTCAC
CATAGAGGATGAAATAATAGCTTATGAAAAAACAAAGGAGATATATGAAGCATTAGATAAGCTTACACAATAG

Upstream 100 bases:

>100_bases
AGCTTGATTAATTATTAGGCTTAAGATTATAGAATATAATCTTTTCTTTGTACTCTGTAAATTTTACTCTGTACTCTAAT
AAAAAAGAGGGGGTTTTTAA

Downstream 100 bases:

>100_bases
GAAAAACAAATTATAAATGATTTTTATATTAAAAATAATAGTCTTAATAAAGTAGCAGAGGATACAAATAAAACTTATAA
TTCAGTAAGATACACTAAAG

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor RpoE-Like Protein

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MYNLLEKYRNGDMGALNEIIENFNPLILKEASKWRIGCYEYEDLVQHGYLSVIKVVNMFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQ

Sequences:

>Translated_130_residues
MYNLLEKYRNGDMGALNEIIENFNPLILKEASKWRIGCYEYEDLVQHGYLSVIKVVNMFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQ
>Mature_130_residues
MYNLLEKYRNGDMGALNEIIENFNPLILKEASKWRIGCYEYEDLVQHGYLSVIKVVNMFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQ

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15333; Mature: 15333

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLLEKYRNGDMGALNEIIENFNPLILKEASKWRIGCYEYEDLVQHGYLSVIKVVNMFK
CCHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GEESKFVPYCINAIKTNYKALLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCHHHHHHHHHH
IYEALDKLTQ
HHHHHHHHCC
>Mature Secondary Structure
MYNLLEKYRNGDMGALNEIIENFNPLILKEASKWRIGCYEYEDLVQHGYLSVIKVVNMFK
CCHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GEESKFVPYCINAIKTNYKALLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCHHHHHHHHHH
IYEALDKLTQ
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA