| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754442
Identifier: 170754442
GI number: 170754442
Start: 2732206
End: 2732457
Strand: Reverse
Name: 170754442
Synonym: CLD_2002
Alternate gene names: NA
Gene position: 2732457-2732206 (Counterclockwise)
Preceding gene: 170755913
Following gene: 170757368
Centisome position: 69.03
GC content: 26.19
Gene sequence:
>252_bases ATGAGTGGAGATAAAACAATACAATTTGATCCTGTAGAAAATAAAAAAACATTAACGAAAGAAATACTTACTAAAGTTTA TAATTCTCTGCTAGAGAAAGGTTATAATCCAGTAAATCAACTAGTAGGATATTTAATCTCTGGTGATCCAACTTATATAA CTAATTATAATGGAGCTAGATCTTTAGTTATAAAGCTAGAAAGAGATGAAATACTAGAGGAAGTAATAAAATCATATTTA GGGATAAATTAA
Upstream 100 bases:
>100_bases AATATGTCTTATAATATAATTAAAGAACATAAAAAACACTCAATACTGGTTGCTCCAAAGAAAGTTGCAATCCTTAAAGA TTGTATAGGAAGGTGATAAA
Downstream 100 bases:
>100_bases AAAAATAAAAATGCCCTGTAGGGCATTTTTATTTTAAATATGGAAATAATATAAGCAGTGAACCCCAATCTACGATTTGG TGTGAATCGCTTACTCCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 83; Mature: 82
Protein sequence:
>83_residues MSGDKTIQFDPVENKKTLTKEILTKVYNSLLEKGYNPVNQLVGYLISGDPTYITNYNGARSLVIKLERDEILEEVIKSYL GIN
Sequences:
>Translated_83_residues MSGDKTIQFDPVENKKTLTKEILTKVYNSLLEKGYNPVNQLVGYLISGDPTYITNYNGARSLVIKLERDEILEEVIKSYL GIN >Mature_82_residues SGDKTIQFDPVENKKTLTKEILTKVYNSLLEKGYNPVNQLVGYLISGDPTYITNYNGARSLVIKLERDEILEEVIKSYLG IN
Specific function: Unknown
COG id: COG4472
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0297 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1948_CLOBM (B1KXB6)
Other databases:
- EMBL: CP000962 - RefSeq: YP_001787881.1 - GeneID: 6153641 - GenomeReviews: CP000962_GR - KEGG: cbl:CLK_1948 - HOGENOM: HBG304642 - OMA: KTMKFNF - ProtClustDB: PRK05473 - HAMAP: MF_01507 - InterPro: IPR009309 - PIRSF: PIRSF037258
Pfam domain/function: PF06135 DUF965
EC number: NA
Molecular weight: Translated: 9411; Mature: 9280
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGDKTIQFDPVENKKTLTKEILTKVYNSLLEKGYNPVNQLVGYLISGDPTYITNYNGAR CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCE SLVIKLERDEILEEVIKSYLGIN EEEEEECHHHHHHHHHHHHHCCC >Mature Secondary Structure SGDKTIQFDPVENKKTLTKEILTKVYNSLLEKGYNPVNQLVGYLISGDPTYITNYNGAR CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCE SLVIKLERDEILEEVIKSYLGIN EEEEEECHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA