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The map label for this gene is yodJ [H]

Identifier: 170754368

GI number: 170754368

Start: 1146838

End: 1147638

Strand: Direct

Name: yodJ [H]

Synonym: CLD_3528

Alternate gene names: 170754368

Gene position: 1146838-1147638 (Clockwise)

Preceding gene: 170756125

Following gene: 170757003

Centisome position: 28.97

GC content: 27.34

Gene sequence:

>801_bases
ATGAGAAATAGAAGACAGAAAAAACGAATATTAAGAAGAATTAATTTTATAATAACTATAGTTATAGTTTTATGTACTAT
ACAGATATTATCAAATAAATATAACAGAAGCATAGAATCTAAAAGAGTACAAGCTATTAAAGAAAAGGAAACTATTAGTG
AAAATAATAAACAACAAACTATTAAAAAAAAGGAGACTAATAGTAAAAATAATAAACAGCAAGCTTTAAAACAAAGCTTA
TTATTAGTAAATAGAGATAATAAGCTAGATGAACATTATCTACCTAATGATCTTACTGTACCTAATATAAGATTTTTAGG
AAATAGTAATCTTGAAGTAAGAAGACTAAGGAGAGTGGCTAGTGGAGCTTTAGAAAATCTTTTCCAGGAAGCTAAAAATG
AGAATATAATATTATTAGGGGTATCAGGATATAGAAACTATCATTATCAGGTAAATGTTTATAATAATTCGGTTTATAGA
AATGGACAACAGCATGCGGATAAGTATGTTGCACAACCAGGAACAAGTGAACATCAAACAGGTTTAGCTATGGATATAGT
TTCAACTGAGTATACTAATTTAGATGAAAATTTTGTTAATACTAGGGCGTATAAATGGCTTAAAGAAAATTGTTATAAGT
ATGGATTTATAATTAGATACCCAAAGGAAAAAGAAGATATTACTGGTTATAATTTTGAGCCTTGGCATATAAGGTATGTA
GGAATAGAGGCAGCTACAGAGATTATGAATAAGGGTATTACTTTAGAGGAATATTTACAGGAAGGTAATTGTAATAAATG
A

Upstream 100 bases:

>100_bases
ATTGTTTTTTATGGTAATAAATTTAATAACTATAAAAAAGTAATAAAATTTTTTTTAGCCTTTTTTCTAATAAAATTAAT
TAGGATATAGGAGGATATAC

Downstream 100 bases:

>100_bases
AAAAGTTAGCATTTATAAAGAAAATTTAATAATTTTATTTTTATAATAGTTATTATTAGAAATTTATGTTTTATAGAGGG
CTCAGCAGATAAAAATAGCA

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRNRRQKKRILRRINFIITIVIVLCTIQILSNKYNRSIESKRVQAIKEKETISENNKQQTIKKKETNSKNNKQQALKQSL
LLVNRDNKLDEHYLPNDLTVPNIRFLGNSNLEVRRLRRVASGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYR
NGQQHADKYVAQPGTSEHQTGLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
GIEAATEIMNKGITLEEYLQEGNCNK

Sequences:

>Translated_266_residues
MRNRRQKKRILRRINFIITIVIVLCTIQILSNKYNRSIESKRVQAIKEKETISENNKQQTIKKKETNSKNNKQQALKQSL
LLVNRDNKLDEHYLPNDLTVPNIRFLGNSNLEVRRLRRVASGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYR
NGQQHADKYVAQPGTSEHQTGLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
GIEAATEIMNKGITLEEYLQEGNCNK
>Mature_266_residues
MRNRRQKKRILRRINFIITIVIVLCTIQILSNKYNRSIESKRVQAIKEKETISENNKQQTIKKKETNSKNNKQQALKQSL
LLVNRDNKLDEHYLPNDLTVPNIRFLGNSNLEVRRLRRVASGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYR
NGQQHADKYVAQPGTSEHQTGLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
GIEAATEIMNKGITLEEYLQEGNCNK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 31286; Mature: 31286

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNRRQKKRILRRINFIITIVIVLCTIQILSNKYNRSIESKRVQAIKEKETISENNKQQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
IKKKETNSKNNKQQALKQSLLLVNRDNKLDEHYLPNDLTVPNIRFLGNSNLEVRRLRRVA
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
SGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYRNGQQHADKYVAQPGTSEHQT
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCHHCCCHHHHHHHHCCCCCCCCCC
GLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
CEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEE
GIEAATEIMNKGITLEEYLQEGNCNK
CHHHHHHHHHCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MRNRRQKKRILRRINFIITIVIVLCTIQILSNKYNRSIESKRVQAIKEKETISENNKQQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
IKKKETNSKNNKQQALKQSLLLVNRDNKLDEHYLPNDLTVPNIRFLGNSNLEVRRLRRVA
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
SGALENLFQEAKNENIILLGVSGYRNYHYQVNVYNNSVYRNGQQHADKYVAQPGTSEHQT
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCHHCCCHHHHHHHHCCCCCCCCCC
GLAMDIVSTEYTNLDENFVNTRAYKWLKENCYKYGFIIRYPKEKEDITGYNFEPWHIRYV
CEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEEE
GIEAATEIMNKGITLEEYLQEGNCNK
CHHHHHHHHHCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]