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The map label for this gene is ysgA [H]

Identifier: 170754304

GI number: 170754304

Start: 3394031

End: 3394810

Strand: Reverse

Name: ysgA [H]

Synonym: CLD_1409

Alternate gene names: 170754304

Gene position: 3394810-3394031 (Counterclockwise)

Preceding gene: 170757360

Following gene: 170755238

Centisome position: 85.77

GC content: 26.28

Gene sequence:

>780_bases
ATGATTTCTAGTAAAGATAATCAATTAATAAAAGAAGTAAGAAAGTTAAGAGAAAAGAAATATAGAACACAAAATAAAAG
CTTTATTATAGAAGGATTTAGATTTTTTGAAGAAGCATTGAAATCTAATAGTAGTGTAAATAAAGTTTTTATAGAAGAAA
AAAGCTTGAATAAATTAGAAGAACTATACAAAAAATATAATATAAACAATGATATAGAAACTTATGTGGTTAATTATTCT
GTTTTAAAAAGTATAGGTAATACAGAAAATCCTCAGGGGATAGTATCAGTAATAAACTATTTTAAAAAAGAAAAATTAGA
TTTACAAAATGGTTTTTATATTTTAGTAGATAAAGTACAAGATCCAGGTAATATGGGAACTATAATAAGAACCGCCCATG
CTGCAGGAGCCTTAGGGGTCATAACAACTAAAGGAACGGTAGATATATATAATGAAAAAACATTAAGGTCTACTATGGGA
TCTATTTTTTATATTCCTATAATAGAAGATGAAAATTTAGAAGTAGTGAAATCGCTACAAAAAAAGGGTTTCAAACTATT
AGTAAGTTCTTTAGATACGAACAGTAATTTTTATGATGTAAATATGGAAAATAATATTATAATTGCTGTAGGAAATGAAG
GAAATGGAATAAGCGAGGTTTTGAATACTCTTAGTGACATAAAGGCTAAAATCCCTATGCCTGGAGCAGCAGAATCGTTA
AATGTAGCAGTAGCATGTTCTATAATGACTTTTGAAAGAATAAGACAAATTAATAAATAA

Upstream 100 bases:

>100_bases
TGTAGACTAATAATTAATGCTGATTTTAAAAATATGAATTAATTTATTACTAAAGTTTAATTTATTAGTCTAAATTAAAA
TGAGGTGCATTATATAAGAA

Downstream 100 bases:

>100_bases
GACTGTTGACAAAAAACTAAACAGTATGTAAAATTATGAGAAGGATAAAAACAGAAAATATTAAACTATGATGAAGAGAG
TAAGTTTAAAATATTTTTAA

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYVVNYS
VLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG
SIFYIPIIEDENLEVVKSLQKKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESL
NVAVACSIMTFERIRQINK

Sequences:

>Translated_259_residues
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYVVNYS
VLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG
SIFYIPIIEDENLEVVKSLQKKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESL
NVAVACSIMTFERIRQINK
>Mature_259_residues
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYVVNYS
VLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMG
SIFYIPIIEDENLEVVKSLQKKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESL
NVAVACSIMTFERIRQINK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=313, Percent_Identity=25.8785942492013, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1790623, Length=150, Percent_Identity=30.6666666666667, Blast_Score=82, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24666840, Length=274, Percent_Identity=25.9124087591241, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29198; Mature: 29198

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
ELYKKYNINNDIETYVVNYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQ
HHHHHHCCCCCHHHEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECC
DPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKSLQ
CCCCCCHHHHHHHCCCCEEEEEECCEEEECCCHHHHHHHCCEEEEEEEECCCHHHHHHHH
KKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESL
HCCHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
NVAVACSIMTFERIRQINK
CEEEEHHHHHHHHHHHCCC
>Mature Secondary Structure
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
ELYKKYNINNDIETYVVNYSVLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQ
HHHHHHCCCCCHHHEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECC
DPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKSLQ
CCCCCCHHHHHHHCCCCEEEEEECCEEEECCCHHHHHHHCCEEEEEEEECCCHHHHHHHH
KKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESL
HCCHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
NVAVACSIMTFERIRQINK
CEEEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]