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The map label for this gene is ydaB [H]

Identifier: 170754292

GI number: 170754292

Start: 2760026

End: 2761564

Strand: Reverse

Name: ydaB [H]

Synonym: CLD_1981

Alternate gene names: 170754292

Gene position: 2761564-2760026 (Counterclockwise)

Preceding gene: 170755312

Following gene: 170754953

Centisome position: 69.77

GC content: 25.67

Gene sequence:

>1539_bases
ATGAAAGAAAAGGTTACTTTTGGAGATATATATACTGTAATTTTTCAAGAGGAAGATAGTAATAAAGAATGTATAATAGT
CTACAATTATGAAAAAAGGATTGTGTACAATAAAAAACAATATCAAATATTGATTAATAAAATGAGTAGATTTTTAAAAC
TTCTTTATCCAGATATAGAAGTCGGAGATTGGATTGGGTTGAAATATCGTAATAACTATCTGTATTATGCAGTAGTATTT
GGAGCTATGAAATTAGGATGGAATATATTATTACTTGGCAATAAAAGTGAAAGTAATAATAGGTATAGATATGAGATAGA
TGTGGAATTAATTGCTATTTTAGATAATAATATATTAGATAATTTTAATGATGAAGCTATTGATGTTCAATGTTTAAATA
GTAAATTTGAGAAAGATATTTGGTCTAGCAAAGTAGCATTTTTATCTTCTGGAACAACAGGAAAGCCACAAGTCATTATA
TATCATGCTTATGCAATTTTAAATCAAATAAAAAATGTTAAACATGAATTTTTAAAAAATGAGACGTTAGCAGATATTGT
GTATAAAACTGATAATTCGCACAGAAAAATAGTAACTTTTTTACCTATGAATCATATTTTAGGATTTTTATTACCTTTAG
TTTTTATTACTTTAGACTTAAAAGTTGTTTTTCTATCAGATCAAACACCATATGGTATTATTAAAGGAATAAGAAATGAG
AATGCTTTAGGAAGTTTTGGTGTGCCTATGGTTTGGAAATTAATAAAAAATATATTGAAGAGAAGGTATTCCCAAAATCG
TGAAGGTGTAGATAAATTATTGGGGGAAAATTTTAAAATTATTTTAAGTGGTGGCAGTAAAACAGATTCTTCTATTAGAA
ATAGTTATATTAGAGCAGGAATTGAATTTTTCGTTGGTTATGGATTAACAGAAACTGGTTTTTTATCTATAGGTAAAAGT
AATCTAAATGACTGTGAGTCTGAGGGAAAAGTTTATGATAATTATGAAATTAAAGTTTTAACTTCAGATGGAAATATAAG
AAATGAAGGTACTGGAGAAATTATTGTAAAATCAGATGCGATATATACTGCTTCTATAAAAGATAAAAAAGAAATTTGTC
CTGAACTAATTGAAGGCATGTATTATAGAACGGGGGATATCTTTGAGCTAAAAAATAGAGAACTTTTTTTTAAAGGTAGG
ATGAAAAATATTATTGTAGATGAATCTGGAGAAAATATATATGCTGAAGAATTAGAAGAATTTTTTAAAGATATGAAGTC
TAAGGGAATTGTATATTTTATATCAGAATATAAAAATAGGGCTACTATGTTCATTGATAGGAATACACATAAACGCATTT
CAAAGGAATATATTATTGAGCTAATAAGAGAAAAAAATAAGAATCTTCCTATTTCAAAGAAAATATTAAAAGTATTATTT
TTAAATATAAATATTGAATTTACTCAAAAGGGAGATCCTATCCGTATTCTGAAAGAATACAGGGATATTGGTGAAGTATT
TAATATAAAAGGAGTATGA

Upstream 100 bases:

>100_bases
GGAAGATTAAAGACTGGAAGTAAAGCCTTAATGTCTGGTGTTGGAGTTGGAATTAATATTGCGACTATCGCAGTAATACT
TTAGTTATGTAGGTGAGTAT

Downstream 100 bases:

>100_bases
TAATTATGATAGATAATAATACAAAAATTGGACTAAAAAAACAAATTAAAAAATATCTATCAGAGCTAATGGATGTTAAT
ACTGAAGATATTATGGATGA

Product: putative acyl-CoA synthetase

Products: AMP; diphosphate; acyl-CoA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MKEKVTFGDIYTVIFQEEDSNKECIIVYNYEKRIVYNKKQYQILINKMSRFLKLLYPDIEVGDWIGLKYRNNYLYYAVVF
GAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILDNFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVII
YHAYAILNQIKNVKHEFLKNETLADIVYKTDNSHRKIVTFLPMNHILGFLLPLVFITLDLKVVFLSDQTPYGIIKGIRNE
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDSSIRNSYIRAGIEFFVGYGLTETGFLSIGKS
NLNDCESEGKVYDNYEIKVLTSDGNIRNEGTGEIIVKSDAIYTASIKDKKEICPELIEGMYYRTGDIFELKNRELFFKGR
MKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
LNINIEFTQKGDPIRILKEYRDIGEVFNIKGV

Sequences:

>Translated_512_residues
MKEKVTFGDIYTVIFQEEDSNKECIIVYNYEKRIVYNKKQYQILINKMSRFLKLLYPDIEVGDWIGLKYRNNYLYYAVVF
GAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILDNFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVII
YHAYAILNQIKNVKHEFLKNETLADIVYKTDNSHRKIVTFLPMNHILGFLLPLVFITLDLKVVFLSDQTPYGIIKGIRNE
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDSSIRNSYIRAGIEFFVGYGLTETGFLSIGKS
NLNDCESEGKVYDNYEIKVLTSDGNIRNEGTGEIIVKSDAIYTASIKDKKEICPELIEGMYYRTGDIFELKNRELFFKGR
MKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
LNINIEFTQKGDPIRILKEYRDIGEVFNIKGV
>Mature_512_residues
MKEKVTFGDIYTVIFQEEDSNKECIIVYNYEKRIVYNKKQYQILINKMSRFLKLLYPDIEVGDWIGLKYRNNYLYYAVVF
GAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILDNFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVII
YHAYAILNQIKNVKHEFLKNETLADIVYKTDNSHRKIVTFLPMNHILGFLLPLVFITLDLKVVFLSDQTPYGIIKGIRNE
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDSSIRNSYIRAGIEFFVGYGLTETGFLSIGKS
NLNDCESEGKVYDNYEIKVLTSDGNIRNEGTGEIIVKSDAIYTASIKDKKEICPELIEGMYYRTGDIFELKNRELFFKGR
MKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
LNINIEFTQKGDPIRILKEYRDIGEVFNIKGV

Specific function: Unknown

COG id: COG1022

COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: 6.2.1.3

Molecular weight: Translated: 59434; Mature: 59434

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKVTFGDIYTVIFQEEDSNKECIIVYNYEKRIVYNKKQYQILINKMSRFLKLLYPDIE
CCCCEEECCEEEEEEEECCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHCCCCC
VGDWIGLKYRNNYLYYAVVFGAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILD
CCCEEEEEEECCEEEEHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCHHC
NFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVIIYHAYAILNQIKNVKHEFLKN
CCCCCEEEEEEHHHHHHHHHHHHHEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC
ETLADIVYKTDNSHRKIVTFLPMNHILGFLLPLVFITLDLKVVFLSDQTPYGIIKGIRNE
CCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHCCCCC
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDSSIRNSYIRAG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
IEFFVGYGLTETGFLSIGKSNLNDCESEGKVYDNYEIKVLTSDGNIRNEGTGEIIVKSDA
HHHHEECCCCCCCEEEECCCCCCCHHHCCCEEECEEEEEEECCCCCCCCCCCEEEEECCE
IYTASIKDKKEICPELIEGMYYRTGDIFELKNRELFFKGRMKNIIVDESGENIYAEELEE
EEEECCCCHHHHHHHHHHCCEECCCCEEEECCCEEEEECCCCEEEEECCCCEEHHHHHHH
FFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
HHHHHHHCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEE
LNINIEFTQKGDPIRILKEYRDIGEVFNIKGV
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKEKVTFGDIYTVIFQEEDSNKECIIVYNYEKRIVYNKKQYQILINKMSRFLKLLYPDIE
CCCCEEECCEEEEEEEECCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHCCCCC
VGDWIGLKYRNNYLYYAVVFGAMKLGWNILLLGNKSESNNRYRYEIDVELIAILDNNILD
CCCEEEEEEECCEEEEHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCHHC
NFNDEAIDVQCLNSKFEKDIWSSKVAFLSSGTTGKPQVIIYHAYAILNQIKNVKHEFLKN
CCCCCEEEEEEHHHHHHHHHHHHHEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC
ETLADIVYKTDNSHRKIVTFLPMNHILGFLLPLVFITLDLKVVFLSDQTPYGIIKGIRNE
CCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHCCCCC
NALGSFGVPMVWKLIKNILKRRYSQNREGVDKLLGENFKIILSGGSKTDSSIRNSYIRAG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
IEFFVGYGLTETGFLSIGKSNLNDCESEGKVYDNYEIKVLTSDGNIRNEGTGEIIVKSDA
HHHHEECCCCCCCEEEECCCCCCCHHHCCCEEECEEEEEEECCCCCCCCCCCEEEEECCE
IYTASIKDKKEICPELIEGMYYRTGDIFELKNRELFFKGRMKNIIVDESGENIYAEELEE
EEEECCCCHHHHHHHHHHCCEECCCCEEEECCCEEEEECCCCEEEEECCCCEEHHHHHHH
FFKDMKSKGIVYFISEYKNRATMFIDRNTHKRISKEYIIELIREKNKNLPISKKILKVLF
HHHHHHHCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEE
LNINIEFTQKGDPIRILKEYRDIGEVFNIKGV
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; long-chain carboxylic acid; CoA

Specific reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]