| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is spoVAD [H]
Identifier: 170754229
GI number: 170754229
Start: 3329162
End: 3330169
Strand: Reverse
Name: spoVAD [H]
Synonym: CLD_1455
Alternate gene names: 170754229
Gene position: 3330169-3329162 (Counterclockwise)
Preceding gene: 170757434
Following gene: 170755705
Centisome position: 84.13
GC content: 33.13
Gene sequence:
>1008_bases ATGAATAAAAAAATTGGTGAGCAAACTTTTAAATTAGATAGTAAACCTAAAATAATAGGTACTACTAGTATAGTTGGACC TAAAGAGGGAGAGGGGCCTTTAAAAGATTATTTTGATGTAATATTAAAAGATGATTTATTTAATCAGGAAAGTTTTGAGA AGGCAGAAAGTGCAATGTTATCTACTGCTATCTCAGATGTTATAAAAAAGTGTAATTTAAAGGATAAAGATATAGATATG TTATGTGCTGGAGATCTATTAAATCAAACTATATCCTCAAGTTTTGCAGCAAGAAATTTAGATATACCTTTTATAGGATT GTATGGAGCTTGTTCTACAATGACAGAATCATTAAGTGTGGCATCTATGCTAATGGATGGAGAATTTGCAAATTATGCTG TAGCAGCTACTTCTTCACATTTTTCAGCAGCAGAAAGACAGTTTAGATTTCCATTAGAATATGGAGCACAAAGATCTCCA ACTTCACAGTGGACAGTTACTGGAGCCGGTGCTATGGTTTTAGGTAAAGAAGGGAATTATCCCTGTATAACCTATGTAAC TATAGGAAAAGTAAAGGATTATGGGGTTAAAAATGTAGATAAGATGGGATCATCTATGGTACCAGCAGCAGTAGCTACCA TATATCAACATTTTAAGGATACAGGAAGAACTCCAGAAGATTATGATATTATTGCAACAGGTGATTTAGGCAAGGTTGGT AGAGAATTAACAGAAAAACTTTTATTAAAACATGGATATAATATAAAGGATGTATATGTAGATTGTGGAGAAATAATATT TGATAATGAAAAACAGGATACTGAAGCTGGTGGAAGTGGATGTGGATGCTCTGCAGTAGTAGGATGTGGATACATATATA AAAACATATTAAGTGGTAAATTTAAGAGAGCTTTATTAGTTTCTACAGGTGCATTACTGAGCACTACATCATCACAGCAG GGAGAGAGTATACCAGGTATTGCTCATGCAGTTGTTATAGAAAGATAA
Upstream 100 bases:
>100_bases GCTGGACCAGTTTTAGTTTATGGTATAGGCTCTTCAGTTATAGTAGGAATAATATACTTTATAATGAGTAAACTTTAATT TAGAATTGGAGGAGTTTACA
Downstream 100 bases:
>100_bases AAAGGAGGGGTTTTCATGGATTATTTAAGTGCTTTTATAGTAGGTGGAGCAATCTGTGTTATAGCTCAAATATTAATGGA TACCACGCAATTAACTCCAG
Product: stage V sporulation protein AD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAMLSTAISDVIKKCNLKDKDIDM LCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSVASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSP TSQWTVTGAGAMVLGKEGNYPCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGKFKRALLVSTGALLSTTSSQQ GESIPGIAHAVVIER
Sequences:
>Translated_335_residues MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAMLSTAISDVIKKCNLKDKDIDM LCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSVASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSP TSQWTVTGAGAMVLGKEGNYPCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGKFKRALLVSTGALLSTTSSQQ GESIPGIAHAVVIER >Mature_335_residues MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAMLSTAISDVIKKCNLKDKDIDM LCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSVASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSP TSQWTVTGAGAMVLGKEGNYPCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGKFKRALLVSTGALLSTTSSQQ GESIPGIAHAVVIER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010894 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF07451 SpoVAD [H]
EC number: NA
Molecular weight: Translated: 36087; Mature: 36087
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAML CCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH STAISDVIKKCNLKDKDIDMLCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSV HHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHH ASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSPTSQWTVTGAGAMVLGKEGNY HHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCEEEECCCEEEEECCCCC PCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG CEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGK HHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FKRALLVSTGALLSTTSSQQGESIPGIAHAVVIER HHHHHEEECCHHHCCCCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAML CCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH STAISDVIKKCNLKDKDIDMLCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSV HHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHH ASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSPTSQWTVTGAGAMVLGKEGNY HHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCEEEECCCEEEEECCCCC PCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG CEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGK HHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FKRALLVSTGALLSTTSSQQGESIPGIAHAVVIER HHHHHEEECCHHHCCCCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3926949; 8969508; 9384377 [H]