| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
Click here to switch to the map view.
The map label for this gene is dadA [H]
Identifier: 170751930
GI number: 170751930
Start: 5880602
End: 5881879
Strand: Reverse
Name: dadA [H]
Synonym: Mrad2831_5562
Alternate gene names: 170751930
Gene position: 5881879-5880602 (Counterclockwise)
Preceding gene: 170751932
Following gene: 170751927
Centisome position: 96.78
GC content: 76.29
Gene sequence:
>1278_bases ATGGCGACGGATGAGACGGCCGACATCGTGGTGGTCGGCGGCGGGATGGTCGGCCTCGCCAGCGCCATCGCGCTGAGGGA TCGCGGGCTCGACGTGGTCCTGCTGGATCCCGGCGAGGCGCGAGCCCGGACCTCCTACGGCAATGCCGGCGTGGTCAGCC GCGGCTCGATCCTGCCGATGTCGAGCCCGGCCCTGTGGGGCAAGCTCCCGGCCTACCTGCGCAACGCCGATCGCGGCCTG AGGCTGCACTACGCGCATCTCCCGCGAATCTTGCCCTACACGGCGCATTTCCTCGCGGCTGCGCGCGCATCCCGCTGGCG CCGCGCGGCCGCGGCGCTGCTGCCGCTGACCAGCGCCGCCTATCCGGCCCACGAGCGGCTGGCGGCCCGGGCCGGCACCG GCGACCGGCTGCAGCGGACGGGCTGGATCAAGGCCTACCGCACCGAGGCGGCCTTCGCGGCCGCCGCCCTGGAGCGCGAG ATCCTGGCCGCGCACGGGGTCGCGTTCGACATCCTCGACACGGCGGCGCTGCAGGCCGTCGAGCCGGCGCTGGTGCGGCC CTACGCGCGGGCCATGCTGCTCACCGAGACGGGATCGGTGCGCGAGCCCGGCCGGCTGATCGAGGCGTGCGAGGCCCTGT TCACCGGCCTCGGCGGCCGCCGCCTGCGCGGCAGCGTCGCCCGGTTGGAGCCCGAGGCCGGTGGCTGGCGCGTCGATCAC GACGGCGGCGCCGTGCGGGGCCGGCAGGTCGTCCTCGCGGCCGGCGCCGCCTCCGGGGCGATCGCCCGGACTCTCGGCTA CCGCTTCGCGGTGGCGGCCGAGCGCGGCTACCATCGCCACTACGCCCTGCATCCGGACAGCCCGCCGCTGACCCGGCCTG TCCTCGACACGGGCGCGGGCTCGATCCTGTCGCCGATGGGCGAGCACCGGGTCCGTGTCCTGTCCGGTGTCGAACTCAAC GCCCGCGCCGCCGCCCCCGACCACACGCAGATCGAGGCGGCGTCCCGCGAGGCGGCCGGCACCCTGCGGCTCGGCGGGCC GCTGGACAACGCGCCGTGGCTCGGCTCCCGCCCGTCGACGCCCGACGGGATGCCGGTGATCGGCCGCGCCCCGCGGCACG ACGGCCTGCTCTTCGCCTTCGGCCACGGTCATATCGGCCTGTCCACCGGCCCGATCACCGGCGAGATCGTCGCCGACCTC GCCACCCGCCGGAACCCGGCGGTGCCGGTCGCGGCCTTCGCGCCGGAACGGCTCCTGCGCTGGCCGCGGCTGCTCTGA
Upstream 100 bases:
>100_bases ATCACACCGGCCCGATGCGCCGACCCGCGGCGGCCCGCTACCCAGGAGGCGGGAAACCCGTCAGAAGGGCGCGCGTGGTG CGGGGCGGGATGTGAGCGGC
Downstream 100 bases:
>100_bases GGGCGTCCGCGATCAGCGCCAGTCGTAGGGGTTGTAGGGCTCGAGCGCGGCCTCGACCTTCCGCAGGAAGTCCGGCTGGC GCTGCAGATCGGCCTCCCGA
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MATDETADIVVVGGGMVGLASAIALRDRGLDVVLLDPGEARARTSYGNAGVVSRGSILPMSSPALWGKLPAYLRNADRGL RLHYAHLPRILPYTAHFLAAARASRWRRAAAALLPLTSAAYPAHERLAARAGTGDRLQRTGWIKAYRTEAAFAAAALERE ILAAHGVAFDILDTAALQAVEPALVRPYARAMLLTETGSVREPGRLIEACEALFTGLGGRRLRGSVARLEPEAGGWRVDH DGGAVRGRQVVLAAGAASGAIARTLGYRFAVAAERGYHRHYALHPDSPPLTRPVLDTGAGSILSPMGEHRVRVLSGVELN ARAAAPDHTQIEAASREAAGTLRLGGPLDNAPWLGSRPSTPDGMPVIGRAPRHDGLLFAFGHGHIGLSTGPITGEIVADL ATRRNPAVPVAAFAPERLLRWPRLL
Sequences:
>Translated_425_residues MATDETADIVVVGGGMVGLASAIALRDRGLDVVLLDPGEARARTSYGNAGVVSRGSILPMSSPALWGKLPAYLRNADRGL RLHYAHLPRILPYTAHFLAAARASRWRRAAAALLPLTSAAYPAHERLAARAGTGDRLQRTGWIKAYRTEAAFAAAALERE ILAAHGVAFDILDTAALQAVEPALVRPYARAMLLTETGSVREPGRLIEACEALFTGLGGRRLRGSVARLEPEAGGWRVDH DGGAVRGRQVVLAAGAASGAIARTLGYRFAVAAERGYHRHYALHPDSPPLTRPVLDTGAGSILSPMGEHRVRVLSGVELN ARAAAPDHTQIEAASREAAGTLRLGGPLDNAPWLGSRPSTPDGMPVIGRAPRHDGLLFAFGHGHIGLSTGPITGEIVADL ATRRNPAVPVAAFAPERLLRWPRLL >Mature_424_residues ATDETADIVVVGGGMVGLASAIALRDRGLDVVLLDPGEARARTSYGNAGVVSRGSILPMSSPALWGKLPAYLRNADRGLR LHYAHLPRILPYTAHFLAAARASRWRRAAAALLPLTSAAYPAHERLAARAGTGDRLQRTGWIKAYRTEAAFAAAALEREI LAAHGVAFDILDTAALQAVEPALVRPYARAMLLTETGSVREPGRLIEACEALFTGLGGRRLRGSVARLEPEAGGWRVDHD GGAVRGRQVVLAAGAASGAIARTLGYRFAVAAERGYHRHYALHPDSPPLTRPVLDTGAGSILSPMGEHRVRVLSGVELNA RAAAPDHTQIEAASREAAGTLRLGGPLDNAPWLGSRPSTPDGMPVIGRAPRHDGLLFAFGHGHIGLSTGPITGEIVADLA TRRNPAVPVAAFAPERLLRWPRLL
Specific function: Oxidative deamination of D-amino acids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Inner Membrane-Bound [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DadA oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787438, Length=439, Percent_Identity=26.6514806378132, Blast_Score=98, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023080 - InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: =1.4.99.1 [H]
Molecular weight: Translated: 44912; Mature: 44781
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDETADIVVVGGGMVGLASAIALRDRGLDVVLLDPGEARARTSYGNAGVVSRGSILPM CCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCCCEECCCCCCC SSPALWGKLPAYLRNADRGLRLHYAHLPRILPYTAHFLAAARASRWRRAAAALLPLTSAA CCCCHHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YPAHERLAARAGTGDRLQRTGWIKAYRTEAAFAAAALEREILAAHGVAFDILDTAALQAV CCHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EPALVRPYARAMLLTETGSVREPGRLIEACEALFTGLGGRRLRGSVARLEPEAGGWRVDH CHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHCCCHHEECCCCCCEEEEC DGGAVRGRQVVLAAGAASGAIARTLGYRFAVAAERGYHRHYALHPDSPPLTRPVLDTGAG CCCCCCCCEEEEEECCCCCHHHHHHCCEEEEEECCCCCEEEEECCCCCCCCCCHHHCCCC SILSPMGEHRVRVLSGVELNARAAAPDHTQIEAASREAAGTLRLGGPLDNAPWLGSRPST HHHCCHHHHHEEEEECCEECCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC PDGMPVIGRAPRHDGLLFAFGHGHIGLSTGPITGEIVADLATRRNPAVPVAAFAPERLLR CCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHH WPRLL CCCCC >Mature Secondary Structure ATDETADIVVVGGGMVGLASAIALRDRGLDVVLLDPGEARARTSYGNAGVVSRGSILPM CCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCCCEECCCCCCC SSPALWGKLPAYLRNADRGLRLHYAHLPRILPYTAHFLAAARASRWRRAAAALLPLTSAA CCCCHHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YPAHERLAARAGTGDRLQRTGWIKAYRTEAAFAAAALEREILAAHGVAFDILDTAALQAV CCHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EPALVRPYARAMLLTETGSVREPGRLIEACEALFTGLGGRRLRGSVARLEPEAGGWRVDH CHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHCCCHHEECCCCCCEEEEC DGGAVRGRQVVLAAGAASGAIARTLGYRFAVAAERGYHRHYALHPDSPPLTRPVLDTGAG CCCCCCCCEEEEEECCCCCHHHHHHCCEEEEEECCCCCEEEEECCCCCCCCCCHHHCCCC SILSPMGEHRVRVLSGVELNARAAAPDHTQIEAASREAAGTLRLGGPLDNAPWLGSRPST HHHCCHHHHHEEEEECCEECCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC PDGMPVIGRAPRHDGLLFAFGHGHIGLSTGPITGEIVADLATRRNPAVPVAAFAPERLLR CCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHH WPRLL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA