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The map label for this gene is cspA [H]

Identifier: 170751748

GI number: 170751748

Start: 5688382

End: 5688591

Strand: Direct

Name: cspA [H]

Synonym: Mrad2831_5378

Alternate gene names: 170751748

Gene position: 5688382-5688591 (Clockwise)

Preceding gene: 170751746

Following gene: 170751749

Centisome position: 93.59

GC content: 63.33

Gene sequence:

>210_bases
GTGAATACCGGCACTGTGAAGTGGTTCAATGAGACCAAGGGCTACGGTTTCATCCAGCCCGACGATGGCGGCAAGGACGT
GTTCGTCCACATCTCGGCCGTCGAGCGCGCCGGGATGCGCAACCTGATCGAAGGCCAGCGGATCGCTTACGAGATCCTCA
CGGACAAGCGCAGCGGCAAGGACGCCGCCGGCAACCTGCAGGCGGCCTGA

Upstream 100 bases:

>100_bases
GACTCGCGCCCCGCCGCACTGGCCAAATCCAGAAAGACCGTGGTGCATCACGCGGCCCTTGCGCCGCGCAGATGGCCTAT
GGACGAACGAGGTACACTAC

Downstream 100 bases:

>100_bases
CCGTCGCGGGTTCTGAAGCGCCTCCCGCGGCTCTCGGTGCGCCAGCGCGCGCAACCGAAGGTCGTGGGGACGCATGAAGC
GGCCGCCTGACGCGGTTCCC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MNTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKRSGKDAAGNLQAA

Sequences:

>Translated_69_residues
MNTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKRSGKDAAGNLQAA
>Mature_69_residues
MNTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKRSGKDAAGNLQAA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=60, Percent_Identity=58.3333333333333, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=51.5151515151515, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788126, Length=49, Percent_Identity=61.2244897959184, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787839, Length=50, Percent_Identity=58, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI2367114, Length=55, Percent_Identity=52.7272727272727, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787834, Length=50, Percent_Identity=54, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787107, Length=52, Percent_Identity=48.0769230769231, Blast_Score=62, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7559; Mature: 7559

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKRSGK
CCCCCEEECCCCCCCEEECCCCCCCEEEEEEEHHHCCCCHHHHCCCCEEEEEECCCCCCC
DAAGNLQAA
CCCCCCCCC
>Mature Secondary Structure
MNTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGMRNLIEGQRIAYEILTDKRSGK
CCCCCEEECCCCCCCEEECCCCCCCEEEEEEEHHHCCCCHHHHCCCCEEEEEECCCCCCC
DAAGNLQAA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]