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The map label for this gene is ycbB [H]

Identifier: 170751743

GI number: 170751743

Start: 5683492

End: 5684790

Strand: Direct

Name: ycbB [H]

Synonym: Mrad2831_5373

Alternate gene names: 170751743

Gene position: 5683492-5684790 (Clockwise)

Preceding gene: 170751739

Following gene: 170751744

Centisome position: 93.51

GC content: 67.51

Gene sequence:

>1299_bases
ATGCGCAAGAAGGCACAAAACCGGTTCACCACGATCCTGAGCGTCGCCGCCCTCGGCGCGCTCGGCATGGGCGCCGCCGA
AGCCCGCGACCAGGGCAACTACGCCCAGGCCGAATGGGCGCAGGACTACGCCTCGCCCGCCGGCATGCAGGTGCAGCGCG
AGACGGTGCCGATCCTCTCGCCCCAGACCGTGGCATCCACCGAGCAGATGGTGGAGCGCTACAAGGATATCGTCGCCCGC
GGCGGCTGGCGGCAGGTCTCCGGCGCCGACCACCTGCGGATCGGCTCGCGCGGCCCGGCCGTGGCGGCCATCCGCCAGCG
CCTGATCGTCACCGGCGACCTCGACCCGGCCGCCGGCAGCTCGGGCGTCTACGATTCCTACGTCGCCGCGGGCGTGAAGC
GGTTCCAGGCCCGGCACGGCCTCAGCCAGACCGGCGCCATGACGATGGCCACCCAGCAGGCCATGAACGTGCCGGCCGAT
GTCCGCCTGCGCCAGCTCGAGATCAACGTCGTGCGCCTGCGCTCCTACTCGGGCGATCTCGGCCGGCGCTTCGTGATCAC
CAACATCCCGGCCGCGCTCGTCGAGACGGTCGAGAACGGTCAGGTCGTCACGCTCCACGCCGCCGGCGTGGGCAAGATCG
ACCGCCAGTCGCCGATCATGAACACCAAGGCGACGCAGATCAATTTCAACCCGACCTGGACGGTCCCGGCTTCCATCGTG
AAGAAGGACCTGATCCCGAAGATGCAGAAGGATCCGAACTACCTCACGGACAACAAGATCCGGATCCTGTCGAACGGCTC
CGAGGTTTCGCCGAAGTCGGTGAACTGGTTCTCGGACGAGGGCACCCGCTACACCTACCGGCAGGATTCGGGCGCCGACT
TCAACTCGATGGGCATCGTCCGCATCAACATCCCGAACCCTTACGGCGTGTTCATGCACGACACGAACACCAAGGGCGTG
TTCGGCGACGATTTCCGCTTCATCTCCTCGGGCTGCGTGCGCGTGCAGAACGTGCGCGAGTACATCACGTGGCTGCTGAA
GGACACGCCCGGCTGGGACCGCCAGAAGGTCGAGGAGGCGATCGAGAGCGGCAAGCGCATCGACGCCAACATCGCCCAGC
CCGTGCCGGTCTACTGGACCTACATCACCGCCTGGTCGACCCCGGACGGCATCGTCCAGTTCCGCGACGACATCTACAAG
CGCGACGGCGTGAACGTGCCCTCGACCATCGGCGCGCCGACCCCGGTCGCCAGCGCCGAGCCGATGCCGCAGACCTTCGA
GCCCGGCGACGAGGAGTAG

Upstream 100 bases:

>100_bases
CCCTTCGATAGGGAGTCTTAACGCCATCCCGACACCGTGGCGCCCGAGACAATCCGCTCCCGTCACGACCTGACGAACCC
CGGACCAGAGCCAGCGACCG

Downstream 100 bases:

>100_bases
TCGCTCCCGGGCGCGGCCGCTCCCGGCCGCGCGCCCGTCCGACCCGATCCGAGGCCCGCACCTCAGCCGAGGCGCGGGCC
TCGCGCGTTCGGGGCCGCCT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MRKKAQNRFTTILSVAALGALGMGAAEARDQGNYAQAEWAQDYASPAGMQVQRETVPILSPQTVASTEQMVERYKDIVAR
GGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLDPAAGSSGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPAD
VRLRQLEINVVRLRSYSGDLGRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWTVPASIV
KKDLIPKMQKDPNYLTDNKIRILSNGSEVSPKSVNWFSDEGTRYTYRQDSGADFNSMGIVRINIPNPYGVFMHDTNTKGV
FGDDFRFISSGCVRVQNVREYITWLLKDTPGWDRQKVEEAIESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYK
RDGVNVPSTIGAPTPVASAEPMPQTFEPGDEE

Sequences:

>Translated_432_residues
MRKKAQNRFTTILSVAALGALGMGAAEARDQGNYAQAEWAQDYASPAGMQVQRETVPILSPQTVASTEQMVERYKDIVAR
GGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLDPAAGSSGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPAD
VRLRQLEINVVRLRSYSGDLGRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWTVPASIV
KKDLIPKMQKDPNYLTDNKIRILSNGSEVSPKSVNWFSDEGTRYTYRQDSGADFNSMGIVRINIPNPYGVFMHDTNTKGV
FGDDFRFISSGCVRVQNVREYITWLLKDTPGWDRQKVEEAIESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYK
RDGVNVPSTIGAPTPVASAEPMPQTFEPGDEE
>Mature_432_residues
MRKKAQNRFTTILSVAALGALGMGAAEARDQGNYAQAEWAQDYASPAGMQVQRETVPILSPQTVASTEQMVERYKDIVAR
GGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLDPAAGSSGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPAD
VRLRQLEINVVRLRSYSGDLGRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWTVPASIV
KKDLIPKMQKDPNYLTDNKIRILSNGSEVSPKSVNWFSDEGTRYTYRQDSGADFNSMGIVRINIPNPYGVFMHDTNTKGV
FGDDFRFISSGCVRVQNVREYITWLLKDTPGWDRQKVEEAIESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYK
RDGVNVPSTIGAPTPVASAEPMPQTFEPGDEE

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=388, Percent_Identity=30.4123711340206, Blast_Score=174, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 47529; Mature: 47529

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKAQNRFTTILSVAALGALGMGAAEARDQGNYAQAEWAQDYASPAGMQVQRETVPILS
CCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC
PQTVASTEQMVERYKDIVARGGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLDPAAGS
CCHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEECCCCCHHHHHHHCEEEEECCCCCCCC
SGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPADVRLRQLEINVVRLRSYSGDL
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHCEEEEEEEEEEEEECCCCCC
GRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWTVPASIV
CCEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHH
KKDLIPKMQKDPNYLTDNKIRILSNGSEVSPKSVNWFSDEGTRYTYRQDSGADFNSMGIV
HHHHCCHHHCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCEE
RINIPNPYGVFMHDTNTKGVFGDDFRFISSGCVRVQNVREYITWLLKDTPGWDRQKVEEA
EEECCCCCEEEEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYKRDGVNVPSTIGAPTPVASAE
HHCCCEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PMPQTFEPGDEE
CCCCCCCCCCCC
>Mature Secondary Structure
MRKKAQNRFTTILSVAALGALGMGAAEARDQGNYAQAEWAQDYASPAGMQVQRETVPILS
CCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC
PQTVASTEQMVERYKDIVARGGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLDPAAGS
CCHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEECCCCCHHHHHHHCEEEEECCCCCCCC
SGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPADVRLRQLEINVVRLRSYSGDL
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHCEEEEEEEEEEEEECCCCCC
GRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWTVPASIV
CCEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHH
KKDLIPKMQKDPNYLTDNKIRILSNGSEVSPKSVNWFSDEGTRYTYRQDSGADFNSMGIV
HHHHCCHHHCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCEE
RINIPNPYGVFMHDTNTKGVFGDDFRFISSGCVRVQNVREYITWLLKDTPGWDRQKVEEA
EEECCCCCEEEEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYKRDGVNVPSTIGAPTPVASAE
HHCCCEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PMPQTFEPGDEE
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]