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The map label for this gene is ydeL [H]

Identifier: 170751139

GI number: 170751139

Start: 5067307

End: 5068812

Strand: Direct

Name: ydeL [H]

Synonym: Mrad2831_4755

Alternate gene names: 170751139

Gene position: 5067307-5068812 (Clockwise)

Preceding gene: 170751138

Following gene: 170751142

Centisome position: 83.37

GC content: 70.58

Gene sequence:

>1506_bases
ATGGCTATCACAGATCATGCCCTCGCTTGGACGCAGCTGTTTGGCGAGCTTGACCGGAGTGGCTTGGCGCTACACCTGCA
GATACGCCGGGCGATCGTGACGGCCATCGAACGGGGGCTGTTCACCGCGGAGGCCCGGCTGCCTTCGACGCGCCAGCTGG
CGTCCCTGCTCGGTGTCGCCCGCAACACAGTGGTGAACGCGTATCAGCAGCTCATCGACGAGGGTTTCCTGGTCGCGCAC
GAGCGCAGCGGGATCTTCCTGGCGCCGGATCTGACCGTCTCCGAAACACGCGGCCCGTCCCACGGACGGACGATCGCGTG
GTCGCGGCGCTTCGCGGTCCGGCCCGCGCAGCTGCGGCAGATCACCAAGCCCCGGGACTGGCTCGACTATCCCTATCCCT
TCCTGTTCGGCCAGTTCGATCCGTCCCTGTTCCCGGCTAACGACTGGCGCGAGAGTGTGCGGGCAGCCTCCGGGGTGTCC
GAGATCAACGCCTGGGCGGGCGACCTGATCGACGAGGACGATGCCGATCTCGTGGAGCAGCTTCGCCTGCAGGTGCTGCC
GCGGCGGGGCATCTTCGCGAGCGCCGACGAGGTGATGGTCACCATCGGCTCGCAGCAGGCGCTCTCGCTGCTGATCCAGC
TGCTGGTCGGCCGCGACACGCCGGTGGGCGTCGAGGATCCGAGCTATCCCGATACCCGCAACATGCTGACCCTCGCCACC
GACGACCTCGCGGCGCTCGCCATCGACCGGCACGGGGTCGTGCCCGATGCCGCCTTCGCCAGCCGGAACGTGGCGTTCGT
CACCGTGGGGCATCAGTGCCCGACCACCGCGGTGATGCCGCTGGAGCGGCGCCGTGCCCTCCTCGAGGCCGCGCGGCGCC
ACGACGTCGTCCTGGTCGAGGACGATTACGAGGCCGACCTCGCCCTGGCGGACGAGATCCCGTCCCTCAAGAGCCTCGAT
GCGGACGGCCGCGTGATCTATGTCGGCAGCTTCTCGAAGGTGCTCGCCCCGGGCCTGCGGGTCGGCTACGTGGTGGCGCC
CCGGACCGTGATCGCGGAGCTACGCGTGCTGCGGCGGCTGATGCTGCGCCACCCGCCGTCGAACAATCAGCGCGCCACCG
CGATGTTCGTGGCGCTCGGGCATTACCGCACGCATCTGCGCCGGACCGCCGGCGTGCTGGAGGAGCGCGCCGTCCGGATC
GCCGGTCTGCTGCCCCGCCTCTTTCCCGCGTTCCGCTGGCGGCGCGACCCGGGGGCCACGAGCTTCTGGGTGGAGGGGCC
TGCCGACCTCGATGCCCGGGATCTCAGCGTGCGCGCCCGCGCCCGCGGCGTCCTGATCGAGCCGGGCGATATCTTCTACG
CCGATCCGGAGGCCGGCCGGGCCTGCTTCCGCCTGGGCTTCGCCTCGATCCGCACCGACCGGATCGAGGCGGGCCTCACC
CGCCTCGCGGAGCTGGTCACGCCGGCCGGAATCCCCGCGTCACAGGGGATGGCCGAGCAGGTCTGA

Upstream 100 bases:

>100_bases
GAGCCATCCACACAGGGCTCCGCGGAGAGAGGAGCCGATCCTGAAGCGCTGGCGCCATCCTTGCCTTGGGTGACACGTCC
CCGAGCAGGAGCCGGATGTC

Downstream 100 bases:

>100_bases
GACCGCCTGCACCGCGCTCGTGACGGCGACGGTGCAGAGCAGCAGGATCGACAGGGCTCGATGACCCCGTCCGGCACCGA
GCCTGAGAACCGCCTCGCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MAITDHALAWTQLFGELDRSGLALHLQIRRAIVTAIERGLFTAEARLPSTRQLASLLGVARNTVVNAYQQLIDEGFLVAH
ERSGIFLAPDLTVSETRGPSHGRTIAWSRRFAVRPAQLRQITKPRDWLDYPYPFLFGQFDPSLFPANDWRESVRAASGVS
EINAWAGDLIDEDDADLVEQLRLQVLPRRGIFASADEVMVTIGSQQALSLLIQLLVGRDTPVGVEDPSYPDTRNMLTLAT
DDLAALAIDRHGVVPDAAFASRNVAFVTVGHQCPTTAVMPLERRRALLEAARRHDVVLVEDDYEADLALADEIPSLKSLD
ADGRVIYVGSFSKVLAPGLRVGYVVAPRTVIAELRVLRRLMLRHPPSNNQRATAMFVALGHYRTHLRRTAGVLEERAVRI
AGLLPRLFPAFRWRRDPGATSFWVEGPADLDARDLSVRARARGVLIEPGDIFYADPEAGRACFRLGFASIRTDRIEAGLT
RLAELVTPAGIPASQGMAEQV

Sequences:

>Translated_501_residues
MAITDHALAWTQLFGELDRSGLALHLQIRRAIVTAIERGLFTAEARLPSTRQLASLLGVARNTVVNAYQQLIDEGFLVAH
ERSGIFLAPDLTVSETRGPSHGRTIAWSRRFAVRPAQLRQITKPRDWLDYPYPFLFGQFDPSLFPANDWRESVRAASGVS
EINAWAGDLIDEDDADLVEQLRLQVLPRRGIFASADEVMVTIGSQQALSLLIQLLVGRDTPVGVEDPSYPDTRNMLTLAT
DDLAALAIDRHGVVPDAAFASRNVAFVTVGHQCPTTAVMPLERRRALLEAARRHDVVLVEDDYEADLALADEIPSLKSLD
ADGRVIYVGSFSKVLAPGLRVGYVVAPRTVIAELRVLRRLMLRHPPSNNQRATAMFVALGHYRTHLRRTAGVLEERAVRI
AGLLPRLFPAFRWRRDPGATSFWVEGPADLDARDLSVRARARGVLIEPGDIFYADPEAGRACFRLGFASIRTDRIEAGLT
RLAELVTPAGIPASQGMAEQV
>Mature_500_residues
AITDHALAWTQLFGELDRSGLALHLQIRRAIVTAIERGLFTAEARLPSTRQLASLLGVARNTVVNAYQQLIDEGFLVAHE
RSGIFLAPDLTVSETRGPSHGRTIAWSRRFAVRPAQLRQITKPRDWLDYPYPFLFGQFDPSLFPANDWRESVRAASGVSE
INAWAGDLIDEDDADLVEQLRLQVLPRRGIFASADEVMVTIGSQQALSLLIQLLVGRDTPVGVEDPSYPDTRNMLTLATD
DLAALAIDRHGVVPDAAFASRNVAFVTVGHQCPTTAVMPLERRRALLEAARRHDVVLVEDDYEADLALADEIPSLKSLDA
DGRVIYVGSFSKVLAPGLRVGYVVAPRTVIAELRVLRRLMLRHPPSNNQRATAMFVALGHYRTHLRRTAGVLEERAVRIA
GLLPRLFPAFRWRRDPGATSFWVEGPADLDARDLSVRARARGVLIEPGDIFYADPEAGRACFRLGFASIRTDRIEAGLTR
LAELVTPAGIPASQGMAEQV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=358, Percent_Identity=25.1396648044693, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI33469970, Length=358, Percent_Identity=25.1396648044693, Blast_Score=112, Evalue=1e-24,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=26.890756302521, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1787710, Length=488, Percent_Identity=28.2786885245902, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 55263; Mature: 55132

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50949 HTH_GNTR ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITDHALAWTQLFGELDRSGLALHLQIRRAIVTAIERGLFTAEARLPSTRQLASLLGVA
CCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHH
RNTVVNAYQQLIDEGFLVAHERSGIFLAPDLTVSETRGPSHGRTIAWSRRFAVRPAQLRQ
HHHHHHHHHHHHHCCEEEEEECCCEEECCCCEEECCCCCCCCCEEEECCCEECCHHHHHH
ITKPRDWLDYPYPFLFGQFDPSLFPANDWRESVRAASGVSEINAWAGDLIDEDDADLVEQ
HCCCCHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH
LRLQVLPRRGIFASADEVMVTIGSQQALSLLIQLLVGRDTPVGVEDPSYPDTRNMLTLAT
HHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
DDLAALAIDRHGVVPDAAFASRNVAFVTVGHQCPTTAVMPLERRRALLEAARRHDVVLVE
CCHHEEEECCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEE
DDYEADLALADEIPSLKSLDADGRVIYVGSFSKVLAPGLRVGYVVAPRTVIAELRVLRRL
CCCCCCEEEHHCCCCCCCCCCCCCEEEEECCHHHHCCCCEEEEEECCHHHHHHHHHHHHH
MLRHPPSNNQRATAMFVALGHYRTHLRRTAGVLEERAVRIAGLLPRLFPAFRWRRDPGAT
HHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SFWVEGPADLDARDLSVRARARGVLIEPGDIFYADPEAGRACFRLGFASIRTDRIEAGLT
EEEECCCCCCCCHHCEEEHHHCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RLAELVTPAGIPASQGMAEQV
HHHHHHCCCCCCCCCCHHHCC
>Mature Secondary Structure 
AITDHALAWTQLFGELDRSGLALHLQIRRAIVTAIERGLFTAEARLPSTRQLASLLGVA
CCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHH
RNTVVNAYQQLIDEGFLVAHERSGIFLAPDLTVSETRGPSHGRTIAWSRRFAVRPAQLRQ
HHHHHHHHHHHHHCCEEEEEECCCEEECCCCEEECCCCCCCCCEEEECCCEECCHHHHHH
ITKPRDWLDYPYPFLFGQFDPSLFPANDWRESVRAASGVSEINAWAGDLIDEDDADLVEQ
HCCCCHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH
LRLQVLPRRGIFASADEVMVTIGSQQALSLLIQLLVGRDTPVGVEDPSYPDTRNMLTLAT
HHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
DDLAALAIDRHGVVPDAAFASRNVAFVTVGHQCPTTAVMPLERRRALLEAARRHDVVLVE
CCHHEEEECCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEE
DDYEADLALADEIPSLKSLDADGRVIYVGSFSKVLAPGLRVGYVVAPRTVIAELRVLRRL
CCCCCCEEEHHCCCCCCCCCCCCCEEEEECCHHHHCCCCEEEEEECCHHHHHHHHHHHHH
MLRHPPSNNQRATAMFVALGHYRTHLRRTAGVLEERAVRIAGLLPRLFPAFRWRRDPGAT
HHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SFWVEGPADLDARDLSVRARARGVLIEPGDIFYADPEAGRACFRLGFASIRTDRIEAGLT
EEEECCCCCCCCHHCEEEHHHCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
RLAELVTPAGIPASQGMAEQV
HHHHHHCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]