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The map label for this gene is yhjC [C]

Identifier: 170751071

GI number: 170751071

Start: 4988518

End: 4989408

Strand: Reverse

Name: yhjC [C]

Synonym: Mrad2831_4682

Alternate gene names: 170751071

Gene position: 4989408-4988518 (Counterclockwise)

Preceding gene: 170751072

Following gene: 170751070

Centisome position: 82.09

GC content: 70.82

Gene sequence:

>891_bases
ATGGACCGCTGGCAGGCCATGCGGATCTTCGCGAAGGTCGCGGAGACGGCGAGCTTCGCGGAGACCGCGCGCCTGATGCA
CATGAGCCCGCCGGCCGTGACCCGCGCCGTCGCCGCGCTGGAAGAGACCATCGGCGCCCGGCTGTTCGTGCGCACTACCC
GCTCCGTGAAGCTGACCGAGGCGGGGGGGCGCTACTACGAGGATTGCCGGCGCATCCTGGCCGACATCGTCGAGGCCGAG
GCCGCCGCCGCCGGTTCCTACGCGACGCCGTCCGGCACGCTCGCGGTGACGGCATCTGTCCTGTTCGGCCACATGCACGT
GCTGCCCATCGTGACCGATTACCTCGACGCCTACCCGACCATGGCGGCACGGACGCTGTTCGTCGACCGGCAGGTGAACA
TCGTCGAGGAAGGCATCGACGTCGCCGTGCGCATCGGCCACCTCTCGGATTCCGGCTTCACGGCCGCGCGGGTCGGGTCG
GTGCGCCGCGTCGTCTGCGGCTCGCCGGCTTACTTCGAGCGGCACGGCGTCCCGCAGACACCGCAGGACCTGAGGGACCA
TCGCGTCGCCATGTCCACGGGCGCCTGGGCCTCGACGGAGTGGCGGTTCGCGCAGGATCAGCGCGTGACGGTCCATCCCG
CCCTGATGAGCAACACGAACGAGGCCGGCATCGCCGCGGCGCTCGCGGGCTGGGGCCTGACCCGGGTGCTGCACTACCAG
ATCGGCTCCGCCTTGCTGGAAGGCCGCCTGCAGGTCGTGCTCGCCGACTACGAGGAGGAGCCGCTGCCCATCCATGTGGT
CTACCCCGAGGGGCGGCAGGCGCCGGCCAAGGTCAGGACATTCGTCGACCTGGCCGTAGCGCGGCTGCGGGCCAACCGCC
TGCTCAACTGA

Upstream 100 bases:

>100_bases
CCGTTCACCATGGCGCGACGGCTTGGCGGCGCGCCTGCTCGAACAGCTGTATTCGTCAAGGCCAGGATGGCCGGGCCGCT
GGGGACGGGGGAGCAGGGAC

Downstream 100 bases:

>100_bases
GCGGGCGCAAGGTCGATGCGAGGCGTCGGTCCGGGTCGGTTCGACCTGGCCGAGGTCAACGGTACCAAGCGATCCTATCT
ATTCCGCAGGCGACAACAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDRWQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTEAGGRYYEDCRRILADIVEAE
AAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPTMAARTLFVDRQVNIVEEGIDVAVRIGHLSDSGFTAARVGS
VRRVVCGSPAYFERHGVPQTPQDLRDHRVAMSTGAWASTEWRFAQDQRVTVHPALMSNTNEAGIAAALAGWGLTRVLHYQ
IGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLRANRLLN

Sequences:

>Translated_296_residues
MDRWQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTEAGGRYYEDCRRILADIVEAE
AAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPTMAARTLFVDRQVNIVEEGIDVAVRIGHLSDSGFTAARVGS
VRRVVCGSPAYFERHGVPQTPQDLRDHRVAMSTGAWASTEWRFAQDQRVTVHPALMSNTNEAGIAAALAGWGLTRVLHYQ
IGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLRANRLLN
>Mature_296_residues
MDRWQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTEAGGRYYEDCRRILADIVEAE
AAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPTMAARTLFVDRQVNIVEEGIDVAVRIGHLSDSGFTAARVGS
VRRVVCGSPAYFERHGVPQTPQDLRDHRVAMSTGAWASTEWRFAQDQRVTVHPALMSNTNEAGIAAALAGWGLTRVLHYQ
IGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLRANRLLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=31.6326530612245, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=27.8745644599303, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=276, Percent_Identity=29.7101449275362, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=30.2816901408451, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.8292682926829, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=31.25, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=31.3167259786477, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789173, Length=183, Percent_Identity=28.4153005464481, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788706, Length=200, Percent_Identity=28, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=27.741935483871, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367136, Length=240, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=90, Percent_Identity=38.8888888888889, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32382; Mature: 32382

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRWQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCEEEEEC
AGGRYYEDCRRILADIVEAEAAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAARTLFVDRQVNIVEEGIDVAVRIGHLSDSGFTAARVGSVRRVVCGSPAYFERHGVPQT
HHHHHEEECCCHHHHHCCCEEEEEEEECCCCCCCHHHHCCHHHEEECCCCHHHHCCCCCC
PQDLRDHRVAMSTGAWASTEWRFAQDQRVTVHPALMSNTNEAGIAAALAGWGLTRVLHYQ
HHHHHHCEEEEECCCCCCCCEEECCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLRANRLLN
HHHHHHHCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRWQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCEEEEEC
AGGRYYEDCRRILADIVEAEAAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MAARTLFVDRQVNIVEEGIDVAVRIGHLSDSGFTAARVGSVRRVVCGSPAYFERHGVPQT
HHHHHEEECCCHHHHHCCCEEEEEEEECCCCCCCHHHHCCHHHEEECCCCHHHHCCCCCC
PQDLRDHRVAMSTGAWASTEWRFAQDQRVTVHPALMSNTNEAGIAAALAGWGLTRVLHYQ
HHHHHHCEEEEECCCCCCCCEEECCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLRANRLLN
HHHHHHHCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]