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The map label for this gene is ybdD [H]

Identifier: 170750924

GI number: 170750924

Start: 4814480

End: 4814701

Strand: Direct

Name: ybdD [H]

Synonym: Mrad2831_4535

Alternate gene names: 170750924

Gene position: 4814480-4814701 (Clockwise)

Preceding gene: 170750923

Following gene: 170750925

Centisome position: 79.21

GC content: 69.82

Gene sequence:

>222_bases
ATGCTGCCGTCGTCGAACCTGCGGGACCGGATCCGGACGCTGTCCAAGTGCGTCTGCGACGGCGCCCGGCTGATGGTGGG
GCAGGGGGACTACGCGGCCTATGCCGAGCATGTCCGCCGCACCCATCCCGATCGGGCGCCGATGACCGAGGTGGAGTTCT
TCCGCAACCGGGAGAACGCCCGCTTCGGGGTCGGCAACACCGCGGGGTTCCGCTGCTGCTGA

Upstream 100 bases:

>100_bases
CGGGCTTCGGCATCGCCGCCTGCCTGAAGGCGTGGCGCGCGGATCGCTGGACCGCGCTGGAGACCGAGCCGCACATGGTC
GCGGCGGAGTAGGAGGTCCC

Downstream 100 bases:

>100_bases
GCGGCGGCCGGTGAGCCTGGTCGTCTCCGCCCGCAGGGACGGCGGCGCGTCTTCGCGGCGGACCGAGTCCCGCTCGCTGC
GCGGACCCGATCCGGCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MLPSSNLRDRIRTLSKCVCDGARLMVGQGDYAAYAEHVRRTHPDRAPMTEVEFFRNRENARFGVGNTAGFRCC

Sequences:

>Translated_73_residues
MLPSSNLRDRIRTLSKCVCDGARLMVGQGDYAAYAEHVRRTHPDRAPMTEVEFFRNRENARFGVGNTAGFRCC
>Mature_73_residues
MLPSSNLRDRIRTLSKCVCDGARLMVGQGDYAAYAEHVRRTHPDRAPMTEVEFFRNRENARFGVGNTAGFRCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=46.1538461538462, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1790813, Length=59, Percent_Identity=42.3728813559322, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 8280; Mature: 8280

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
5.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSSNLRDRIRTLSKCVCDGARLMVGQGDYAAYAEHVRRTHPDRAPMTEVEFFRNRENA
CCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
RFGVGNTAGFRCC
CCCCCCCCCCCCC
>Mature Secondary Structure
MLPSSNLRDRIRTLSKCVCDGARLMVGQGDYAAYAEHVRRTHPDRAPMTEVEFFRNRENA
CCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
RFGVGNTAGFRCC
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]