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The map label for this gene is ygiP [C]

Identifier: 170750788

GI number: 170750788

Start: 4665692

End: 4666648

Strand: Reverse

Name: ygiP [C]

Synonym: Mrad2831_4399

Alternate gene names: 170750788

Gene position: 4666648-4665692 (Counterclockwise)

Preceding gene: 170750792

Following gene: 170750787

Centisome position: 76.78

GC content: 73.56

Gene sequence:

>957_bases
ATGGTTGCGAGAACGGAAACCTTCCGGGGCGGGCTCGACGATGTGCGGGCTTTCTGCGCCGTCGTGGATCTCGGCACGGT
GACGGCCGCCGCAGCGACTCTGCAGGAAACCAAGGGCAGCGTCAGCCGGCGGATCTCCCGCCTGGAGCAGGCGCTGGGCG
TCCGGCTGATGGCGCGAACCTCCCGGGCGGTGTCGCCGACCGCCGAGGGCCTCGCCTTCTACGCCAAGGCGCAGGACAGC
CTGACGCTCCTGGACGAGGCGGCCGAGACCGCCCGCGACGCCCGCACGGTGCCGGCGGGGCACCTGCGGATCACGACCTC
GATCGATTTCGGGATCGAGGTGATGCCCGAGATCGTCGCGAGCTTCCGGGCCGCCTACCCGCAGATCACCGTGGAGATGC
TCAACACCGACGCGCGGCTCGACCTCGCGGCCAACCGGATCGATCTCGCCCTGCGGCTGGGCGGCGCGGAGGAGACCGGC
TACCGCGCGATGGTCCTCGCGACCCTGGCGCTGGCCCTCTACGCCGCCCCCGCCTACCTGGAGCGCCGCCCGGCCCCGGC
GGACCTCGCCGACCTGCGCGACCACGACCTGATCCTCGCCCGGGAACGGATCGGCACGGCCGGGCTGACCCTCTCCGACG
GCCGGGGCCGCACGGAGCCGCTGTCCCTGAGCCCGGCGATCCGGGTCAGCGACTTCGCGACCGCGCTCCGTCTCACCCTC
GCGGGCGCCGGGATCGGCCACCTCCCGAGCCTCGTGGCCGCCCGGGCCGTGGAGGCCGGGCAGATCGTGCGCGTGCTCGG
CCCGTGGGCGACCCGCAGCAGCACCTTGCGCGCCGTCACCCTGGCCGGGCGCGAGCTGCCGGCCCGTGTCCAGGTCTTCC
GCGAGCATGTCCGGGCCGTCCTGGCGTCGCGGGGATGCCGCCGTGACAGCGCGGAAACTCACACCGAATACAGATAA

Upstream 100 bases:

>100_bases
GGTGTCTCCTGCAGAGCAGACGGCCGAGCGCGAGTCGCTGCGCCGCAGCCGCCGTGTAGACCCGTTCACGGCACCGGTTG
AGCCTGCTATCCGGAACCCC

Downstream 100 bases:

>100_bases
ACCGATTTATTTATCTGTATCAACGCTCTACATAGGTCTATATCGCTAAAGTTTTACCGGACATCGTAGTGCCCGGTTGA
GGGGCCGCATCGCACCATGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MVARTETFRGGLDDVRAFCAVVDLGTVTAAAATLQETKGSVSRRISRLEQALGVRLMARTSRAVSPTAEGLAFYAKAQDS
LTLLDEAAETARDARTVPAGHLRITTSIDFGIEVMPEIVASFRAAYPQITVEMLNTDARLDLAANRIDLALRLGGAEETG
YRAMVLATLALALYAAPAYLERRPAPADLADLRDHDLILARERIGTAGLTLSDGRGRTEPLSLSPAIRVSDFATALRLTL
AGAGIGHLPSLVAARAVEAGQIVRVLGPWATRSSTLRAVTLAGRELPARVQVFREHVRAVLASRGCRRDSAETHTEYR

Sequences:

>Translated_318_residues
MVARTETFRGGLDDVRAFCAVVDLGTVTAAAATLQETKGSVSRRISRLEQALGVRLMARTSRAVSPTAEGLAFYAKAQDS
LTLLDEAAETARDARTVPAGHLRITTSIDFGIEVMPEIVASFRAAYPQITVEMLNTDARLDLAANRIDLALRLGGAEETG
YRAMVLATLALALYAAPAYLERRPAPADLADLRDHDLILARERIGTAGLTLSDGRGRTEPLSLSPAIRVSDFATALRLTL
AGAGIGHLPSLVAARAVEAGQIVRVLGPWATRSSTLRAVTLAGRELPARVQVFREHVRAVLASRGCRRDSAETHTEYR
>Mature_318_residues
MVARTETFRGGLDDVRAFCAVVDLGTVTAAAATLQETKGSVSRRISRLEQALGVRLMARTSRAVSPTAEGLAFYAKAQDS
LTLLDEAAETARDARTVPAGHLRITTSIDFGIEVMPEIVASFRAAYPQITVEMLNTDARLDLAANRIDLALRLGGAEETG
YRAMVLATLALALYAAPAYLERRPAPADLADLRDHDLILARERIGTAGLTLSDGRGRTEPLSLSPAIRVSDFATALRLTL
AGAGIGHLPSLVAARAVEAGQIVRVLGPWATRSSTLRAVTLAGRELPARVQVFREHVRAVLASRGCRRDSAETHTEYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=267, Percent_Identity=29.9625468164794, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=28.8135593220339, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=26.3513513513513, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=28.3276450511945, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=26.1168384879725, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787589, Length=258, Percent_Identity=26.7441860465116, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=24.0549828178694, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789204, Length=144, Percent_Identity=29.8611111111111, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=30.3643724696356, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=26.7716535433071, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693105, Length=254, Percent_Identity=23.2283464566929, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=128, Percent_Identity=28.125, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34064; Mature: 34064

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVARTETFRGGLDDVRAFCAVVDLGTVTAAAATLQETKGSVSRRISRLEQALGVRLMART
CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAVSPTAEGLAFYAKAQDSLTLLDEAAETARDARTVPAGHLRITTSIDFGIEVMPEIVA
CCCCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
SFRAAYPQITVEMLNTDARLDLAANRIDLALRLGGAEETGYRAMVLATLALALYAAPAYL
HHHHHCCCEEEEECCCCCEEEEHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ERRPAPADLADLRDHDLILARERIGTAGLTLSDGRGRTEPLSLSPAIRVSDFATALRLTL
HCCCCCCCHHHCCCCCEEEEHHHCCCCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHH
AGAGIGHLPSLVAARAVEAGQIVRVLGPWATRSSTLRAVTLAGRELPARVQVFREHVRAV
HCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
LASRGCRRDSAETHTEYR
HHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVARTETFRGGLDDVRAFCAVVDLGTVTAAAATLQETKGSVSRRISRLEQALGVRLMART
CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAVSPTAEGLAFYAKAQDSLTLLDEAAETARDARTVPAGHLRITTSIDFGIEVMPEIVA
CCCCCCCHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
SFRAAYPQITVEMLNTDARLDLAANRIDLALRLGGAEETGYRAMVLATLALALYAAPAYL
HHHHHCCCEEEEECCCCCEEEEHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ERRPAPADLADLRDHDLILARERIGTAGLTLSDGRGRTEPLSLSPAIRVSDFATALRLTL
HCCCCCCCHHHCCCCCEEEEHHHCCCCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHH
AGAGIGHLPSLVAARAVEAGQIVRVLGPWATRSSTLRAVTLAGRELPARVQVFREHVRAV
HCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
LASRGCRRDSAETHTEYR
HHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]