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The map label for this gene is yjbM [H]

Identifier: 170750538

GI number: 170750538

Start: 4405093

End: 4406106

Strand: Reverse

Name: yjbM [H]

Synonym: Mrad2831_4146

Alternate gene names: 170750538

Gene position: 4406106-4405093 (Counterclockwise)

Preceding gene: 170750539

Following gene: 170750537

Centisome position: 72.49

GC content: 43.2

Gene sequence:

>1014_bases
ATGAGCAAGTTCGATATCGCTGGATTGCGAAAAGAATATAGCGTCAATCATCGCTATTACTGTCAAATTGTAGAAGAAGT
GTCGCACGTATTGCAATCTATGATTGCTATTTCTGATATCAAAATTCATAATATTGTCGGACGTGTCAAGGACATCGAGT
CACTAATCGAAAAATCAATTGAAAAGGAGCTTACTGATCCAATTAAACAAATCAAAGATATTTCCGGGGTTCGTGTTGTG
TGCTTATTTAGAGATGATTTGCGGCGATTGGAGAAGCTTATATGCGAAAATTTCTCTGTAATTTCCCAAGACGACAAGAT
ATCGTCAAGTGAAGGCTTCGGATATATGTCAATACATTATATATGCAGTCTTAGAGAAACCTTTTCCGGACCAAGGTACG
ATAACATAAAAGGATTTGTATTCGAGATTCAGACCAGAACTATTTGTATGGATGCGTGGGCCGCAGTTTCGCACTACCTT
GCATACAAGGGGCAATGGGATGTGCCGGTCGAACTCCAAAAAGCAATGAATGCGCTGAGCGGGTTATTTTATGTGGCCGA
CAGTGAGTTTCAACAAATCTATGGTGCAAAAAGTGCTTCAACGAACAAAGCCCACGGCGATATTTCAGACAATACACTTG
TATCAGTCCCAGTAAATCTCGATACCATTACGGCATATATTAAGAAGAGGTTCCCAGATAGAAGGGTCGACGACTCAAGT
TCAATTTCAAACCTTGTTCATCAGATCCAGCTATCCGGATACGAAACGATCGAGCAAATTGAAAAAGATGTGAACAGTGC
GGTAGACTTGATGGAGTCCGGAGAGAAATCCGATCCGCCAGGTGGACCAGTAGGAACGTATACGGCAGTCGGTGCGCTGC
GACAGACACTAGCGATTGCGAATGAAGAAATGGAGCGACTTAGGTCGCTCGAAGGGAAAGCCCCTTACGACCGAGTGTCA
GATCGCATGCTAAGAGAGGAATTTCTGAAAAGACAAAAGCGCGCAGTCCGGTGA

Upstream 100 bases:

>100_bases
CCTTAGGTCGCTGATGTTTTACGCATTTCTGCGAAAATCATCATTGATGCATGCTTTCTATCCTATAGAAGTTTGTCTAT
TTTAATTCAAAGGCCCTGCT

Downstream 100 bases:

>100_bases
TGTATGCCCACGCTCTACCAGGGCAGGTGGGTGGGTCTAGATATCAGTAGGGTTAGTCCTTTCGAAGACGGCTTTTGTGA
AGGCGCTGTAGAAAACACCA

Product: RelA/SpoT domain-containing protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSKFDIAGLRKEYSVNHRYYCQIVEEVSHVLQSMIAISDIKIHNIVGRVKDIESLIEKSIEKELTDPIKQIKDISGVRVV
CLFRDDLRRLEKLICENFSVISQDDKISSSEGFGYMSIHYICSLRETFSGPRYDNIKGFVFEIQTRTICMDAWAAVSHYL
AYKGQWDVPVELQKAMNALSGLFYVADSEFQQIYGAKSASTNKAHGDISDNTLVSVPVNLDTITAYIKKRFPDRRVDDSS
SISNLVHQIQLSGYETIEQIEKDVNSAVDLMESGEKSDPPGGPVGTYTAVGALRQTLAIANEEMERLRSLEGKAPYDRVS
DRMLREEFLKRQKRAVR

Sequences:

>Translated_337_residues
MSKFDIAGLRKEYSVNHRYYCQIVEEVSHVLQSMIAISDIKIHNIVGRVKDIESLIEKSIEKELTDPIKQIKDISGVRVV
CLFRDDLRRLEKLICENFSVISQDDKISSSEGFGYMSIHYICSLRETFSGPRYDNIKGFVFEIQTRTICMDAWAAVSHYL
AYKGQWDVPVELQKAMNALSGLFYVADSEFQQIYGAKSASTNKAHGDISDNTLVSVPVNLDTITAYIKKRFPDRRVDDSS
SISNLVHQIQLSGYETIEQIEKDVNSAVDLMESGEKSDPPGGPVGTYTAVGALRQTLAIANEEMERLRSLEGKAPYDRVS
DRMLREEFLKRQKRAVR
>Mature_336_residues
SKFDIAGLRKEYSVNHRYYCQIVEEVSHVLQSMIAISDIKIHNIVGRVKDIESLIEKSIEKELTDPIKQIKDISGVRVVC
LFRDDLRRLEKLICENFSVISQDDKISSSEGFGYMSIHYICSLRETFSGPRYDNIKGFVFEIQTRTICMDAWAAVSHYLA
YKGQWDVPVELQKAMNALSGLFYVADSEFQQIYGAKSASTNKAHGDISDNTLVSVPVNLDTITAYIKKRFPDRRVDDSSS
ISNLVHQIQLSGYETIEQIEKDVNSAVDLMESGEKSDPPGGPVGTYTAVGALRQTLAIANEEMERLRSLEGKAPYDRVSD
RMLREEFLKRQKRAVR

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 38212; Mature: 38081

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFDIAGLRKEYSVNHRYYCQIVEEVSHVLQSMIAISDIKIHNIVGRVKDIESLIEKSI
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKELTDPIKQIKDISGVRVVCLFRDDLRRLEKLICENFSVISQDDKISSSEGFGYMSIHY
HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
ICSLRETFSGPRYDNIKGFVFEIQTRTICMDAWAAVSHYLAYKGQWDVPVELQKAMNALS
HHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
GLFYVADSEFQQIYGAKSASTNKAHGDISDNTLVSVPVNLDTITAYIKKRFPDRRVDDSS
HHHHEECHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCHH
SISNLVHQIQLSGYETIEQIEKDVNSAVDLMESGEKSDPPGGPVGTYTAVGALRQTLAIA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NEEMERLRSLEGKAPYDRVSDRMLREEFLKRQKRAVR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKFDIAGLRKEYSVNHRYYCQIVEEVSHVLQSMIAISDIKIHNIVGRVKDIESLIEKSI
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKELTDPIKQIKDISGVRVVCLFRDDLRRLEKLICENFSVISQDDKISSSEGFGYMSIHY
HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
ICSLRETFSGPRYDNIKGFVFEIQTRTICMDAWAAVSHYLAYKGQWDVPVELQKAMNALS
HHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
GLFYVADSEFQQIYGAKSASTNKAHGDISDNTLVSVPVNLDTITAYIKKRFPDRRVDDSS
HHHHEECHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCHH
SISNLVHQIQLSGYETIEQIEKDVNSAVDLMESGEKSDPPGGPVGTYTAVGALRQTLAIA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NEEMERLRSLEGKAPYDRVSDRMLREEFLKRQKRAVR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]