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The map label for this gene is mdcF [H]

Identifier: 170750491

GI number: 170750491

Start: 4349694

End: 4350653

Strand: Reverse

Name: mdcF [H]

Synonym: Mrad2831_4098

Alternate gene names: 170750491

Gene position: 4350653-4349694 (Counterclockwise)

Preceding gene: 170750492

Following gene: 170750490

Centisome position: 71.58

GC content: 74.79

Gene sequence:

>960_bases
ATGCTCTCGACCCTGCTGGTCGTGCTGCCGATCTTCGCGCTGATCTTCGCCGGCTGGCTGACGCGGCGGATCGGGGTGCT
CGGGGCCGCCGCCACCACCGAGCTCAACCGGTTCGTGGTCTTCCTGGCCCTGCCGGCGCTCCTGTTCGACGTGACCGCGC
ACGCCCACTGGAGCGCCATCTGGAAGCCCGGCTTCATCGGCGCCTTCGGGCTCAGCAGCCTCGCGGTCTTCGGCCTCACC
GTGATGATCCGGCGCGGGGCGGGGCGGCCGCTGGCCGACGCCGCGGTCGACGGCCTCAACGCCGGCTACGCCAATACCGG
CTTCATGGGCTTCCCGCTGGCGCTGGTCGCCTTCGGGCCGGAGGCGCTCGCGCCCACCACGGTGGCGGCGATCCTCACGG
TCTGCGGCGTGTTCGCGGTGGCGATCGTGCTGATCGAGACCGGTCTGCGGCGCGAGGCGGCCGCCACGGGCCGCGGCGGC
GGGGCCCGCCGGCCGGTCTGGTGGACGGTTATCCGCTCCCTCGTGCGCAACCCGCTGCTGGTGGCGCCGGCGCTGGGCGC
CCTGGTGCCGAGCGCCGGGCTGACCGTGCCGGAGGCGGTGGCCACGTTCCTGAAGCTCCTCGGCGGCGCGGCGGCGCCCT
GCGCCCTGGTGGCGCTCGGCCTGTTCCTGGCCCAGGCCCGCCACACCGGGGGCGGGCAGGGGCGCACCGCCGCGCTGCTC
GTCGGCCTGAAGCTCGCGCTCCACCCGCTCCTGGCCTACGGCCTCGGCCGCTACCTGTTCGACCTGCCCCCGCTCCTGCT
CCACACCGCCGTGCTCATGTCCGCCCTCCCCACCGGCACCGGGCCGTTCATGCTGGCCGAGTTCTACCGGCGCGAGGCCG
ACCTGACCGCCACCGTGGTGCTGGCCTCCACCGTGCTGGCCATCGTCACGGTCTCGGCCTACCTCGCGGCGATCGCCTAG

Upstream 100 bases:

>100_bases
GGGCGGGGGCCGCGGCATGGCAGGTCCCCGTCCGCGGCACTGGAGCCGGGATCGGAAACCGTCCTAAGGCCGGAGCATCG
TCCTCCGACCCGGACCCGCC

Downstream 100 bases:

>100_bases
GCGTCGCCACCCCCCGGCGCTCCGGCGCTCCGCGGCCTCACGGTCGGAAACGGGACGATCACGCTCTTGCCGCAGAGGAA
TCGTAACGTTTGCCCCGTAG

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MLSTLLVVLPIFALIFAGWLTRRIGVLGAAATTELNRFVVFLALPALLFDVTAHAHWSAIWKPGFIGAFGLSSLAVFGLT
VMIRRGAGRPLADAAVDGLNAGYANTGFMGFPLALVAFGPEALAPTTVAAILTVCGVFAVAIVLIETGLRREAAATGRGG
GARRPVWWTVIRSLVRNPLLVAPALGALVPSAGLTVPEAVATFLKLLGGAAAPCALVALGLFLAQARHTGGGQGRTAALL
VGLKLALHPLLAYGLGRYLFDLPPLLLHTAVLMSALPTGTGPFMLAEFYRREADLTATVVLASTVLAIVTVSAYLAAIA

Sequences:

>Translated_319_residues
MLSTLLVVLPIFALIFAGWLTRRIGVLGAAATTELNRFVVFLALPALLFDVTAHAHWSAIWKPGFIGAFGLSSLAVFGLT
VMIRRGAGRPLADAAVDGLNAGYANTGFMGFPLALVAFGPEALAPTTVAAILTVCGVFAVAIVLIETGLRREAAATGRGG
GARRPVWWTVIRSLVRNPLLVAPALGALVPSAGLTVPEAVATFLKLLGGAAAPCALVALGLFLAQARHTGGGQGRTAALL
VGLKLALHPLLAYGLGRYLFDLPPLLLHTAVLMSALPTGTGPFMLAEFYRREADLTATVVLASTVLAIVTVSAYLAAIA
>Mature_319_residues
MLSTLLVVLPIFALIFAGWLTRRIGVLGAAATTELNRFVVFLALPALLFDVTAHAHWSAIWKPGFIGAFGLSSLAVFGLT
VMIRRGAGRPLADAAVDGLNAGYANTGFMGFPLALVAFGPEALAPTTVAAILTVCGVFAVAIVLIETGLRREAAATGRGG
GARRPVWWTVIRSLVRNPLLVAPALGALVPSAGLTVPEAVATFLKLLGGAAAPCALVALGLFLAQARHTGGGQGRTAALL
VGLKLALHPLLAYGLGRYLFDLPPLLLHTAVLMSALPTGTGPFMLAEFYRREADLTATVVLASTVLAIVTVSAYLAAIA

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32893; Mature: 32893

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTLLVVLPIFALIFAGWLTRRIGVLGAAATTELNRFVVFLALPALLFDVTAHAHWSAI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WKPGFIGAFGLSSLAVFGLTVMIRRGAGRPLADAAVDGLNAGYANTGFMGFPLALVAFGP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
EALAPTTVAAILTVCGVFAVAIVLIETGLRREAAATGRGGGARRPVWWTVIRSLVRNPLL
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEE
VAPALGALVPSAGLTVPEAVATFLKLLGGAAAPCALVALGLFLAQARHTGGGQGRTAALL
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
VGLKLALHPLLAYGLGRYLFDLPPLLLHTAVLMSALPTGTGPFMLAEFYRREADLTATVV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHH
LASTVLAIVTVSAYLAAIA
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSTLLVVLPIFALIFAGWLTRRIGVLGAAATTELNRFVVFLALPALLFDVTAHAHWSAI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WKPGFIGAFGLSSLAVFGLTVMIRRGAGRPLADAAVDGLNAGYANTGFMGFPLALVAFGP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
EALAPTTVAAILTVCGVFAVAIVLIETGLRREAAATGRGGGARRPVWWTVIRSLVRNPLL
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEE
VAPALGALVPSAGLTVPEAVATFLKLLGGAAAPCALVALGLFLAQARHTGGGQGRTAALL
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
VGLKLALHPLLAYGLGRYLFDLPPLLLHTAVLMSALPTGTGPFMLAEFYRREADLTATVV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHH
LASTVLAIVTVSAYLAAIA
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]