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The map label for this gene is rbfA

Identifier: 170750124

GI number: 170750124

Start: 3965774

End: 3966202

Strand: Reverse

Name: rbfA

Synonym: Mrad2831_3726

Alternate gene names: 170750124

Gene position: 3966202-3965774 (Counterclockwise)

Preceding gene: 170750125

Following gene: 170750123

Centisome position: 65.26

GC content: 71.79

Gene sequence:

>429_bases
ATGGCTCAGAAACCGACCTCCACCGGCCCCTCGCAGCGCCAGCAGCGCGTGGCCGAACTCGTGCGGCACGCGCTCGCCGA
GGTGCTCCAGCGGGGCGACATCCAGGATCCGGTGCTCGGCACGCATGTCGTGACCGTGCCGGAGGTGCGGATGTCGCCGG
ACCTGAAGCTCGCCACCGCCTACGTGATGCCGCTCGGCGGCCTCGACGAGGCGCCTGTGATCGCCGCTCTGGAGCGCCAC
CGGAAGGTGCTGCGCCAGGCGGTGGCCCGACGGGTGAACCTGAAATTCGCGCCGGAGCTGCGGTTCCGGCGGGACGAGAC
CTTCGACGAGGCGGCGCGCATCGACAGGCTGCTGCGGGACGAGCGGGTCCAGCGCGACCTCGACTCCGCGCCCGAGGACG
ACGAACCGGAGACCGGGACGGGGCATTGA

Upstream 100 bases:

>100_bases
TCCGGACTCATCCGGACAGGGCGGCCGCGGCACCTGCCGCGGCCGTCTTTTCTTTTTCAGGACGTGCGCCGACCGCTCCG
GCGGGCCGGCCCGAGACAGA

Downstream 100 bases:

>100_bases
GTCCCGATACCAAGCAGAAAGGGACGGGGCATCGACCCCGGGGGACACGCGGACATGACGGTTTCCATGGAAGATTTGCC
GCCGGCCGAGCGCCAGGCTC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAQKPTSTGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATAYVMPLGGLDEAPVIAALERH
RKVLRQAVARRVNLKFAPELRFRRDETFDEAARIDRLLRDERVQRDLDSAPEDDEPETGTGH

Sequences:

>Translated_142_residues
MAQKPTSTGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATAYVMPLGGLDEAPVIAALERH
RKVLRQAVARRVNLKFAPELRFRRDETFDEAARIDRLLRDERVQRDLDSAPEDDEPETGTGH
>Mature_141_residues
AQKPTSTGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATAYVMPLGGLDEAPVIAALERHR
KVLRQAVARRVNLKFAPELRFRRDETFDEAARIDRLLRDERVQRDLDSAPEDDEPETGTGH

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_METRJ (B1LWZ6)

Other databases:

- EMBL:   CP001001
- RefSeq:   YP_001756384.1
- ProteinModelPortal:   B1LWZ6
- SMR:   B1LWZ6
- GeneID:   6139779
- GenomeReviews:   CP001001_GR
- KEGG:   mrd:Mrad2831_3726
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   CLSK2331299
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15977; Mature: 15846

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKPTSTGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHH
YVMPLGGLDEAPVIAALERHRKVLRQAVARRVNLKFAPELRFRRDETFDEAARIDRLLRD
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHH
ERVQRDLDSAPEDDEPETGTGH
HHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQKPTSTGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHH
YVMPLGGLDEAPVIAALERHRKVLRQAVARRVNLKFAPELRFRRDETFDEAARIDRLLRD
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHH
ERVQRDLDSAPEDDEPETGTGH
HHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA