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The map label for this gene is cycM [H]

Identifier: 170750047

GI number: 170750047

Start: 3881869

End: 3882840

Strand: Reverse

Name: cycM [H]

Synonym: Mrad2831_3648

Alternate gene names: 170750047

Gene position: 3882840-3881869 (Counterclockwise)

Preceding gene: 170750050

Following gene: 170750046

Centisome position: 63.89

GC content: 72.84

Gene sequence:

>972_bases
ATGAACTCGTTCGAGGTGAACAAGGTCCTGGGTGCAGTCCTCGGCGCCCTTCTGTTCGCGGCCGGATCGGGTTTCGTCGC
CGAATTGATCTATCACCCGAAGCCGGCGGGCAAAGCCGGCTACGACCTGCCCGAGCCGCAGCCCGAGGCCGCCGCCGCGG
CGCCCGAGGCCAAGGTCGAGCCGATCGCCGTCCGCCTCGCCAGCGCCAACGTCGAGAAGGGCGAGGCCGGCACCAAGGCC
TGCCACGCCTGCCACAGCTTCGAGAAGGGCGGCCCCAACAAGGTCGGTCCCGACCTGTACGGCATCGTCGAGCGGCCGAA
GGGCGCGCATGCGGGCTTCGACTACTCGGCGGCCATGAAGGAGAAGGGCGGCACCTGGACCTACGCCGACCTCGACGAGT
TCCTCACGAGCCCGAAGGCCTACGTGAAGGGCACCAAGATGGCCTACGCCGGCATCGCCGCGCCGCAGGAGCGGGCCAAC
GTCATCGCCTACCTGCGGACGCTCGCCGAATCGCCGAAGCCGCTGCCGGCCGTCGAGAAGAGCGACGCCGCGCCGGCGGC
CGCGCCCGCCGCGGCCAAGCCCGAAGACAAGCCCGCAGCCGACAAGCCGTCTGCCGACAAGCCTGCCGCCGGCAAGGCGT
CCGAGGGCAAGGACAGCCCGGCCAAGCCCGCCGATACCGGCACCGCCAAGCCGGTCGAGGCGAAGTCGCCCGGCAGCCCG
CGCACGACCGGCGAGTCGAGCGACCGCAACGCGCCGGCCCCGCCGGCCAGCGCCCACGACAGCGACCAGCAGGGCCAGCC
CTCGAGCCTGATCCCCGCCGAGCCGCCCGCGCCGACGGCGCCGGCCGCCAAGGAGCCGCCCGCGAAGGCCAATCCCGAGG
CCGTCGACCGGGCGAAGGATCTCGAGGTCGGCGGCCCGACCAAGGATCTGAACGCGCCGCTGCCGACCCCGCAGCCGCTG
CCGAAGGAGTAG

Upstream 100 bases:

>100_bases
GGAACCGCTAAGGCAACCTCGAAATCTTCCAATGTCCGGTGTCCGAGCCCGCTCGCCCGTGTCAGGCGCGCGATCGGCAC
GGCCGAGTTGCGAGAAGAGC

Downstream 100 bases:

>100_bases
GCGGCACCTCCGGGTCCGGGTCCGGGGCCGGGGACGGTCCCGCCCCTCGCGTGTCTGGCGCGTTCCGCCGGCATGGCTCC
GGGCGCGGCCCTTGCTCTAA

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNSFEVNKVLGAVLGALLFAAGSGFVAELIYHPKPAGKAGYDLPEPQPEAAAAAPEAKVEPIAVRLASANVEKGEAGTKA
CHACHSFEKGGPNKVGPDLYGIVERPKGAHAGFDYSAAMKEKGGTWTYADLDEFLTSPKAYVKGTKMAYAGIAAPQERAN
VIAYLRTLAESPKPLPAVEKSDAAPAAAPAAAKPEDKPAADKPSADKPAAGKASEGKDSPAKPADTGTAKPVEAKSPGSP
RTTGESSDRNAPAPPASAHDSDQQGQPSSLIPAEPPAPTAPAAKEPPAKANPEAVDRAKDLEVGGPTKDLNAPLPTPQPL
PKE

Sequences:

>Translated_323_residues
MNSFEVNKVLGAVLGALLFAAGSGFVAELIYHPKPAGKAGYDLPEPQPEAAAAAPEAKVEPIAVRLASANVEKGEAGTKA
CHACHSFEKGGPNKVGPDLYGIVERPKGAHAGFDYSAAMKEKGGTWTYADLDEFLTSPKAYVKGTKMAYAGIAAPQERAN
VIAYLRTLAESPKPLPAVEKSDAAPAAAPAAAKPEDKPAADKPSADKPAAGKASEGKDSPAKPADTGTAKPVEAKSPGSP
RTTGESSDRNAPAPPASAHDSDQQGQPSSLIPAEPPAPTAPAAKEPPAKANPEAVDRAKDLEVGGPTKDLNAPLPTPQPL
PKE
>Mature_323_residues
MNSFEVNKVLGAVLGALLFAAGSGFVAELIYHPKPAGKAGYDLPEPQPEAAAAAPEAKVEPIAVRLASANVEKGEAGTKA
CHACHSFEKGGPNKVGPDLYGIVERPKGAHAGFDYSAAMKEKGGTWTYADLDEFLTSPKAYVKGTKMAYAGIAAPQERAN
VIAYLRTLAESPKPLPAVEKSDAAPAAAPAAAKPEDKPAADKPSADKPAAGKASEGKDSPAKPADTGTAKPVEAKSPGSP
RTTGESSDRNAPAPPASAHDSDQQGQPSSLIPAEPPAPTAPAAKEPPAKANPEAVDRAKDLEVGGPTKDLNAPLPTPQPL
PKE

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=99, Percent_Identity=45.4545454545455, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=107, Percent_Identity=43.9252336448598, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=85, Percent_Identity=43.5294117647059, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6320796, Length=85, Percent_Identity=44.7058823529412, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6322508, Length=90, Percent_Identity=43.3333333333333, Blast_Score=90, Evalue=6e-19,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=44.6601941747573, Blast_Score=98, Evalue=8e-21,
Organism=Drosophila melanogaster, GI17137228, Length=101, Percent_Identity=46.5346534653465, Blast_Score=98, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 32902; Mature: 32902

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFEVNKVLGAVLGALLFAAGSGFVAELIYHPKPAGKAGYDLPEPQPEAAAAAPEAKVE
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
PIAVRLASANVEKGEAGTKACHACHSFEKGGPNKVGPDLYGIVERPKGAHAGFDYSAAMK
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHH
EKGGTWTYADLDEFLTSPKAYVKGTKMAYAGIAAPQERANVIAYLRTLAESPKPLPAVEK
HCCCCEEHHHHHHHHCCCHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
SDAAPAAAPAAAKPEDKPAADKPSADKPAAGKASEGKDSPAKPADTGTAKPVEAKSPGSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTTGESSDRNAPAPPASAHDSDQQGQPSSLIPAEPPAPTAPAAKEPPAKANPEAVDRAKD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LEVGGPTKDLNAPLPTPQPLPKE
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSFEVNKVLGAVLGALLFAAGSGFVAELIYHPKPAGKAGYDLPEPQPEAAAAAPEAKVE
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
PIAVRLASANVEKGEAGTKACHACHSFEKGGPNKVGPDLYGIVERPKGAHAGFDYSAAMK
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHH
EKGGTWTYADLDEFLTSPKAYVKGTKMAYAGIAAPQERANVIAYLRTLAESPKPLPAVEK
HCCCCEEHHHHHHHHCCCHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
SDAAPAAAPAAAKPEDKPAADKPSADKPAAGKASEGKDSPAKPADTGTAKPVEAKSPGSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RTTGESSDRNAPAPPASAHDSDQQGQPSSLIPAEPPAPTAPAAKEPPAKANPEAVDRAKD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LEVGGPTKDLNAPLPTPQPLPKE
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]