| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
Click here to switch to the map view.
The map label for this gene is yyaJ [H]
Identifier: 170749930
GI number: 170749930
Start: 3745278
End: 3746687
Strand: Direct
Name: yyaJ [H]
Synonym: Mrad2831_3530
Alternate gene names: 170749930
Gene position: 3745278-3746687 (Clockwise)
Preceding gene: 170749929
Following gene: 170749931
Centisome position: 61.62
GC content: 71.84
Gene sequence:
>1410_bases ATGGCGACGCGTACGGCGGTCCGGGCTGCCGATGAAGGTCTCGATCCCGGCGCCATCCTGGCCCGTCTCGACCGGCTTCC GGCGACGCCGACGGTCTGGCGCCTCGTGGTGCTGCTCGGGCTCGGCTTCTTCTTCGAGCTCTACGACCTGCTCTTCACCG GCTACGTCGCGCCGGGCCTCGTCAAGGCCGGGATCCTGACGCCGACGACCCCGGGCCTGTTCGGTGCCAGCGGCGTCGCG AGCTTCGTCGCCGCCCTGTTCACCGGCCTATTCATCGGCACCCTCGCCTGCGGCTGGCTCGCCGACCGGTTCGGCCGGCG GGCGATCTTCACGTGGTCGCTCTTGTCCTACACCGCCGCCAACGTGGTGATGGCCTGCCAGAGCGACGCCTTCGGCCTCA ATCTCTGGCGCCTGATCGCCGGGATCGGCCTCGGCCTGGAGATGGTGACGATCGGCAGCTACCTCTCCGAGCTGGTGCCG AAGGCGATCCGCGGCCGGGCCTTCGCCCTGTGCCAGGGCATCGGCTTCACCGCCGTGCCGGTCGTGGCGTTCCTGTCCTA CCTGCTGATCCCGGCGGCGCCCCTCGGCATCGACGGGTGGCGCTGGGTCGTGCTGATCGGTGCCTCGGCGGCGATCGTGG TCTGGTGGATGCGGGCGGGCCTGCCGGAGAGCCCGCGCTGGCTCGTCGAGCACGGCCGTCTGGCGGAGGCCGAGGCGGTC CTGCGGCAGCTGGAGGCGCGGATCGCGGCCGAGACCGGCGGCCCGCTTCCCGCACCGGCCGCGCCGGAGCCGGTGCAGCC GCGCGGCGCGTTCCGCGACCTCTGGGTCCAGCCCTACCGGCGCCGGGCCCTGATGATGGCGGGGTTCAACGTCTTCCAGA CGGTGGGCTTCTACGGCTTCGCCAACTGGGTGCCGACCCTCCTGGTGGCCCAGGGCATCACGGTGACGTCGAGCCTCGCC TACACGGCCCTGATCGCGCTCGCCGCCCCGGTCGGGCCCCTGATCGGCCTCGCCATCGCCGACCGGTTCGAGCGCAAGCA CGTCATCGTGGCCGCCGCCCTCCTCTACATCGCCTGCGGCCTGGCCTTCGCGCAGACGCGGGACGTCGCCGTCATCGTGG CGCTCGGCATCGGCCTGACGCTGGCCTCGAACGTGATGTCGTACAGCTTCCACGCCTATCAGGCCGAGCTGTTCCCCACG GGCATCCGCGCCCGGGCGGTCGGCTTCGTCTATTCCTGGAGCCGCTTCTCGGCGATCTTCACCGGCTTCGTCATCGCGTT CGTGCTGCGGGAGGCCGGGACGCCGGGCGTGTTCCTGTTCATCTCGGCGGCGATGCTGGCCGCGGGCCTGCTCGTCGGGC TGCTGGGTCCCCGGACGCGGGACGTCGCGCTGGAGAAGATCGCGGGGTGA
Upstream 100 bases:
>100_bases AGGGTCGCCTCCCGGCCGGCGTCGCGCCCCCTTGCGCGGCGCGCGCTTCCGCGGCACTGCGCCGGCGGGGCGCCGCGGCG CCGAGACGAGGCTCATCGGC
Downstream 100 bases:
>100_bases GGCGCGTGAGGAGCACGGCTCCCGGCAAGCCGAATCCGTGCTGGCCTCGGGCATGGTCGCTCAGCCGAGATCCCGGATGA CGGTCGACGAGTTTCTCGCC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MATRTAVRAADEGLDPGAILARLDRLPATPTVWRLVVLLGLGFFFELYDLLFTGYVAPGLVKAGILTPTTPGLFGASGVA SFVAALFTGLFIGTLACGWLADRFGRRAIFTWSLLSYTAANVVMACQSDAFGLNLWRLIAGIGLGLEMVTIGSYLSELVP KAIRGRAFALCQGIGFTAVPVVAFLSYLLIPAAPLGIDGWRWVVLIGASAAIVVWWMRAGLPESPRWLVEHGRLAEAEAV LRQLEARIAAETGGPLPAPAAPEPVQPRGAFRDLWVQPYRRRALMMAGFNVFQTVGFYGFANWVPTLLVAQGITVTSSLA YTALIALAAPVGPLIGLAIADRFERKHVIVAAALLYIACGLAFAQTRDVAVIVALGIGLTLASNVMSYSFHAYQAELFPT GIRARAVGFVYSWSRFSAIFTGFVIAFVLREAGTPGVFLFISAAMLAAGLLVGLLGPRTRDVALEKIAG
Sequences:
>Translated_469_residues MATRTAVRAADEGLDPGAILARLDRLPATPTVWRLVVLLGLGFFFELYDLLFTGYVAPGLVKAGILTPTTPGLFGASGVA SFVAALFTGLFIGTLACGWLADRFGRRAIFTWSLLSYTAANVVMACQSDAFGLNLWRLIAGIGLGLEMVTIGSYLSELVP KAIRGRAFALCQGIGFTAVPVVAFLSYLLIPAAPLGIDGWRWVVLIGASAAIVVWWMRAGLPESPRWLVEHGRLAEAEAV LRQLEARIAAETGGPLPAPAAPEPVQPRGAFRDLWVQPYRRRALMMAGFNVFQTVGFYGFANWVPTLLVAQGITVTSSLA YTALIALAAPVGPLIGLAIADRFERKHVIVAAALLYIACGLAFAQTRDVAVIVALGIGLTLASNVMSYSFHAYQAELFPT GIRARAVGFVYSWSRFSAIFTGFVIAFVLREAGTPGVFLFISAAMLAAGLLVGLLGPRTRDVALEKIAG >Mature_468_residues ATRTAVRAADEGLDPGAILARLDRLPATPTVWRLVVLLGLGFFFELYDLLFTGYVAPGLVKAGILTPTTPGLFGASGVAS FVAALFTGLFIGTLACGWLADRFGRRAIFTWSLLSYTAANVVMACQSDAFGLNLWRLIAGIGLGLEMVTIGSYLSELVPK AIRGRAFALCQGIGFTAVPVVAFLSYLLIPAAPLGIDGWRWVVLIGASAAIVVWWMRAGLPESPRWLVEHGRLAEAEAVL RQLEARIAAETGGPLPAPAAPEPVQPRGAFRDLWVQPYRRRALMMAGFNVFQTVGFYGFANWVPTLLVAQGITVTSSLAY TALIALAAPVGPLIGLAIADRFERKHVIVAAALLYIACGLAFAQTRDVAVIVALGIGLTLASNVMSYSFHAYQAELFPTG IRARAVGFVYSWSRFSAIFTGFVIAFVLREAGTPGVFLFISAAMLAAGLLVGLLGPRTRDVALEKIAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI4506999, Length=400, Percent_Identity=27, Blast_Score=83, Evalue=6e-16, Organism=Homo sapiens, GI166064021, Length=386, Percent_Identity=27.720207253886, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI302148518, Length=359, Percent_Identity=25.3481894150418, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI24308167, Length=462, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI203098995, Length=160, Percent_Identity=31.875, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI7662270, Length=346, Percent_Identity=22.8323699421965, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI216548223, Length=320, Percent_Identity=25, Blast_Score=66, Evalue=8e-11, Organism=Escherichia coli, GI1788068, Length=467, Percent_Identity=29.9785867237687, Blast_Score=162, Evalue=4e-41, Organism=Escherichia coli, GI1788074, Length=458, Percent_Identity=27.0742358078603, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI87082159, Length=419, Percent_Identity=28.1622911694511, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1786229, Length=458, Percent_Identity=25.1091703056769, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1790463, Length=364, Percent_Identity=24.7252747252747, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1789207, Length=406, Percent_Identity=25.3694581280788, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1789312, Length=401, Percent_Identity=22.4438902743142, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87082231, Length=223, Percent_Identity=27.3542600896861, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI87082404, Length=382, Percent_Identity=20.1570680628272, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6321068, Length=227, Percent_Identity=25.1101321585903, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6320705, Length=331, Percent_Identity=24.1691842900302, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI19922616, Length=355, Percent_Identity=23.943661971831, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 49909; Mature: 49778
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRTAVRAADEGLDPGAILARLDRLPATPTVWRLVVLLGLGFFFELYDLLFTGYVAPGL CCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKAGILTPTTPGLFGASGVASFVAALFTGLFIGTLACGWLADRFGRRAIFTWSLLSYTAA HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH NVVMACQSDAFGLNLWRLIAGIGLGLEMVTIGSYLSELVPKAIRGRAFALCQGIGFTAVP HHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH VVAFLSYLLIPAAPLGIDGWRWVVLIGASAAIVVWWMRAGLPESPRWLVEHGRLAEAEAV HHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHH LRQLEARIAAETGGPLPAPAAPEPVQPRGAFRDLWVQPYRRRALMMAGFNVFQTVGFYGF HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANWVPTLLVAQGITVTSSLAYTALIALAAPVGPLIGLAIADRFERKHVIVAAALLYIACG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAFAQTRDVAVIVALGIGLTLASNVMSYSFHAYQAELFPTGIRARAVGFVYSWSRFSAIF HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH TGFVIAFVLREAGTPGVFLFISAAMLAAGLLVGLLGPRTRDVALEKIAG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure ATRTAVRAADEGLDPGAILARLDRLPATPTVWRLVVLLGLGFFFELYDLLFTGYVAPGL CCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKAGILTPTTPGLFGASGVASFVAALFTGLFIGTLACGWLADRFGRRAIFTWSLLSYTAA HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH NVVMACQSDAFGLNLWRLIAGIGLGLEMVTIGSYLSELVPKAIRGRAFALCQGIGFTAVP HHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHH VVAFLSYLLIPAAPLGIDGWRWVVLIGASAAIVVWWMRAGLPESPRWLVEHGRLAEAEAV HHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHH LRQLEARIAAETGGPLPAPAAPEPVQPRGAFRDLWVQPYRRRALMMAGFNVFQTVGFYGF HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANWVPTLLVAQGITVTSSLAYTALIALAAPVGPLIGLAIADRFERKHVIVAAALLYIACG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAFAQTRDVAVIVALGIGLTLASNVMSYSFHAYQAELFPTGIRARAVGFVYSWSRFSAIF HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH TGFVIAFVLREAGTPGVFLFISAAMLAAGLLVGLLGPRTRDVALEKIAG HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]