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The map label for this gene is rraA [C]

Identifier: 170749897

GI number: 170749897

Start: 3713585

End: 3714232

Strand: Direct

Name: rraA [C]

Synonym: Mrad2831_3497

Alternate gene names: 170749897

Gene position: 3713585-3714232 (Clockwise)

Preceding gene: 170749896

Following gene: 170749899

Centisome position: 61.1

GC content: 74.07

Gene sequence:

>648_bases
ATGTCCGCCATCACCCGCCATCCGCCGCCGCCCGCCGTCGACCCGGCTGTGCTGGCGGCTTTCCGAGACGTCTCGACGGC
CACGATCAGCGACTGCCTGGCGCGGATGCCGGTCCTGGCCGGCCTGCGCCCGTTCCACCGCGGCGGACCACTCGTCGGCA
CGGCCTTCACGGTTCGCGTCCGGAGCGGCGACAACCTCGCCATCCATCAGGCTCTGGAAGAGGTCCGTCCCGGCGACGTG
ATCGTGGTCGACGGCGGCGGCGACACGAGCCGCGCGCTGGTGGGCGACATCATGAAGGCGATCGCCGAGAGCCGGGGCGT
GGCCGGTTTCGTGATCGACGGCGCCGTGCGCGACACGGCGGCCTTCGCGGGCTCGGACTTTCCCTGCTACGCCCGTGACG
CGACGCCGCGGGGTCCGTTCAAGACCGGTCCCGGCGCGATCAACGGGCCGGTCTGCGTCGGCGGCTGGACGGTGAATCCC
GGGGACGTGGTGGTCGGCGACGCCGACGGCGTCGTCTCCTTCCCGCCCGGCGACGCGGCGGCCCTGCTCGACGCTGTGCG
TGCGCAGGCGGCCCGCGAGGCGGAGGTTCTGGAGCAGATCCGGGCCGGCCGCTACGACGGCCGCTACGCCCGGGTGGCGA
CGGGCTGA

Upstream 100 bases:

>100_bases
CGCCGCGACACCGGCCGCGGCCTGGGGCAGGATCCCCCAGGCCCCCGCCGATACGCCGCGATGCCGCGGGGGCGATGACG
CCAGGGAGACGCAGAGGCCG

Downstream 100 bases:

>100_bases
TCGGGCCGGTCACGTCCGGGCGCGTGCAGGCGCTGCCACAGGGCCTCGGCCGCGCCGCCGCGGCTCCCCCGCGCCCGGAA
CAGCCGGATCTCCACCGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSAITRHPPPPAVDPAVLAAFRDVSTATISDCLARMPVLAGLRPFHRGGPLVGTAFTVRVRSGDNLAIHQALEEVRPGDV
IVVDGGGDTSRALVGDIMKAIAESRGVAGFVIDGAVRDTAAFAGSDFPCYARDATPRGPFKTGPGAINGPVCVGGWTVNP
GDVVVGDADGVVSFPPGDAAALLDAVRAQAAREAEVLEQIRAGRYDGRYARVATG

Sequences:

>Translated_215_residues
MSAITRHPPPPAVDPAVLAAFRDVSTATISDCLARMPVLAGLRPFHRGGPLVGTAFTVRVRSGDNLAIHQALEEVRPGDV
IVVDGGGDTSRALVGDIMKAIAESRGVAGFVIDGAVRDTAAFAGSDFPCYARDATPRGPFKTGPGAINGPVCVGGWTVNP
GDVVVGDADGVVSFPPGDAAALLDAVRAQAAREAEVLEQIRAGRYDGRYARVATG
>Mature_214_residues
SAITRHPPPPAVDPAVLAAFRDVSTATISDCLARMPVLAGLRPFHRGGPLVGTAFTVRVRSGDNLAIHQALEEVRPGDVI
VVDGGGDTSRALVGDIMKAIAESRGVAGFVIDGAVRDTAAFAGSDFPCYARDATPRGPFKTGPGAINGPVCVGGWTVNPG
DVVVGDADGVVSFPPGDAAALLDAVRAQAAREAEVLEQIRAGRYDGRYARVATG

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 22040; Mature: 21909

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAITRHPPPPAVDPAVLAAFRDVSTATISDCLARMPVLAGLRPFHRGGPLVGTAFTVRV
CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE
RSGDNLAIHQALEEVRPGDVIVVDGGGDTSRALVGDIMKAIAESRGVAGFVIDGAVRDTA
ECCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
AFAGSDFPCYARDATPRGPFKTGPGAINGPVCVGGWTVNPGDVVVGDADGVVSFPPGDAA
HHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCEEECCCCEEEECCCCEEECCCCHHH
ALLDAVRAQAAREAEVLEQIRAGRYDGRYARVATG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure 
SAITRHPPPPAVDPAVLAAFRDVSTATISDCLARMPVLAGLRPFHRGGPLVGTAFTVRV
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE
RSGDNLAIHQALEEVRPGDVIVVDGGGDTSRALVGDIMKAIAESRGVAGFVIDGAVRDTA
ECCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
AFAGSDFPCYARDATPRGPFKTGPGAINGPVCVGGWTVNPGDVVVGDADGVVSFPPGDAA
HHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCEEECCCCEEEECCCCEEECCCCHHH
ALLDAVRAQAAREAEVLEQIRAGRYDGRYARVATG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]