| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is 170749751
Identifier: 170749751
GI number: 170749751
Start: 3557613
End: 3558428
Strand: Direct
Name: 170749751
Synonym: Mrad2831_3350
Alternate gene names: NA
Gene position: 3557613-3558428 (Clockwise)
Preceding gene: 170749750
Following gene: 170749752
Centisome position: 58.53
GC content: 73.04
Gene sequence:
>816_bases GTGAGCCAGCACCCGGGCGCCGACGGCGCCGCACCTGTCTTCGCCGACGCGGTGGACGCGCGGCGCGCGATCCGCGCGGG CCGGTTCCGGGGCCACACCTCGGGTCTCGTCCCCGCCCACGCGCAGGGCAACCTGATGATCCTGCCGCGGGCCATGGCGG AGGATTTCCACCGCTTCTGCCAGCAGAACCCGAAGCCCTGCCCGATCCTCGGCGTCTCGCGGCCCGGCGCCCGCGCGCTT CCGACGCTCGGGGCGGACCTCGACCTCGCCACCGACGTCCCCGGCTATCGCGTCTACGAGGGGGGCGAACTCGCGGCGCA GCTGCCCGACCTGACCGGCGTCTGGCGCGAGGACCTCGTCACCTTCGTCCTCGGCTGCTCCTTCTCGTTCGAGGCCGGCC TGATCGAGGCGGGCATCCCGCTCCGGCACGTTGCCCTGGGCCGCAACGTCGCGATGTACCGGACGTCGATCGAGACCCAA CCGTCGGGACCGTTCCACGGCCCCCTGGTGGTCTCTATGCGGCCGATGAAGGCGGCGGACGCCATCAAGGCCGTGCAGGT GACGGCCCGGATGCCGGCGGTCCACGGGGCGCCGATCCATCTCGGCGACCCGGGCCTGATCGGCATCCGCGACCTCGCGC GGCCGGATTTCGGCGACCCCGTCCCGATCGAGCCCGACGAGCTCCCGGTCTTCTGGGCCTGCGGGGTCACCCCGCAGGCG GTGGCGATGGCGGCGCGACTGCCGCTCTGCATCACCCACGCGCCCGGTCACATGCTGATCACCGACCTCCTCAACCGGGA CCTGCCGTTCCTGTGA
Upstream 100 bases:
>100_bases CCGCAGGAAATGAATCGCTGAAGCGATCGCGATCTTGCGGAATACGGGCGCCCGGCGAGGGCGGCCCGGCGCACGACGAC CAGCCGGGGAGATCAACGCG
Downstream 100 bases:
>100_bases CCCTCCCGGCCGCGTGGCGGCCCGTCCGCGAAGGAGTTGCGCCATGTGGGTGAAAGACACGAGTCCGGCGGAACGCCGGG TCCTGGGCGCGGCCTTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MSQHPGADGAAPVFADAVDARRAIRAGRFRGHTSGLVPAHAQGNLMILPRAMAEDFHRFCQQNPKPCPILGVSRPGARAL PTLGADLDLATDVPGYRVYEGGELAAQLPDLTGVWREDLVTFVLGCSFSFEAGLIEAGIPLRHVALGRNVAMYRTSIETQ PSGPFHGPLVVSMRPMKAADAIKAVQVTARMPAVHGAPIHLGDPGLIGIRDLARPDFGDPVPIEPDELPVFWACGVTPQA VAMAARLPLCITHAPGHMLITDLLNRDLPFL
Sequences:
>Translated_271_residues MSQHPGADGAAPVFADAVDARRAIRAGRFRGHTSGLVPAHAQGNLMILPRAMAEDFHRFCQQNPKPCPILGVSRPGARAL PTLGADLDLATDVPGYRVYEGGELAAQLPDLTGVWREDLVTFVLGCSFSFEAGLIEAGIPLRHVALGRNVAMYRTSIETQ PSGPFHGPLVVSMRPMKAADAIKAVQVTARMPAVHGAPIHLGDPGLIGIRDLARPDFGDPVPIEPDELPVFWACGVTPQA VAMAARLPLCITHAPGHMLITDLLNRDLPFL >Mature_270_residues SQHPGADGAAPVFADAVDARRAIRAGRFRGHTSGLVPAHAQGNLMILPRAMAEDFHRFCQQNPKPCPILGVSRPGARALP TLGADLDLATDVPGYRVYEGGELAAQLPDLTGVWREDLVTFVLGCSFSFEAGLIEAGIPLRHVALGRNVAMYRTSIETQP SGPFHGPLVVSMRPMKAADAIKAVQVTARMPAVHGAPIHLGDPGLIGIRDLARPDFGDPVPIEPDELPVFWACGVTPQAV AMAARLPLCITHAPGHMLITDLLNRDLPFL
Specific function: Unknown
COG id: COG4336
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0317 family
Homologues:
Organism=Homo sapiens, GI156139135, Length=240, Percent_Identity=35, Blast_Score=145, Evalue=5e-35, Organism=Homo sapiens, GI156139133, Length=240, Percent_Identity=34.5833333333333, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI156139131, Length=240, Percent_Identity=34.5833333333333, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI156139129, Length=240, Percent_Identity=34.5833333333333, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI156139137, Length=240, Percent_Identity=32.9166666666667, Blast_Score=115, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3350_METRJ (B1LSM6)
Other databases:
- EMBL: CP001001 - RefSeq: YP_001756011.1 - ProteinModelPortal: B1LSM6 - SMR: B1LSM6 - GeneID: 6139398 - GenomeReviews: CP001001_GR - KEGG: mrd:Mrad2831_3350 - HOGENOM: HBG289473 - OMA: GPMVVSM - ProtClustDB: PRK05463 - HAMAP: MF_01830 - InterPro: IPR009906 - InterPro: IPR016938 - PIRSF: PIRSF029755
Pfam domain/function: PF07286 DUF1445
EC number: NA
Molecular weight: Translated: 28868; Mature: 28737
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQHPGADGAAPVFADAVDARRAIRAGRFRGHTSGLVPAHAQGNLMILPRAMAEDFHRFC CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHH QQNPKPCPILGVSRPGARALPTLGADLDLATDVPGYRVYEGGELAAQLPDLTGVWREDLV HCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCCCHHHHHHHHH TFVLGCSFSFEAGLIEAGIPLRHVALGRNVAMYRTSIETQPSGPFHGPLVVSMRPMKAAD HHHHHCCCCCCCCEEECCCCEEEHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHH AIKAVQVTARMPAVHGAPIHLGDPGLIGIRDLARPDFGDPVPIEPDELPVFWACGVTPQA HHHHHHHHHHCCCCCCCEEEECCCCCEEHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHH VAMAARLPLCITHAPGHMLITDLLNRDLPFL HHHHHHCCEEEEECCCHHHHHHHHCCCCCCC >Mature Secondary Structure SQHPGADGAAPVFADAVDARRAIRAGRFRGHTSGLVPAHAQGNLMILPRAMAEDFHRFC CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHH QQNPKPCPILGVSRPGARALPTLGADLDLATDVPGYRVYEGGELAAQLPDLTGVWREDLV HCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEECCCCCHHHHHHHHH TFVLGCSFSFEAGLIEAGIPLRHVALGRNVAMYRTSIETQPSGPFHGPLVVSMRPMKAAD HHHHHCCCCCCCCEEECCCCEEEHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHH AIKAVQVTARMPAVHGAPIHLGDPGLIGIRDLARPDFGDPVPIEPDELPVFWACGVTPQA HHHHHHHHHHCCCCCCCEEEECCCCCEEHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHH VAMAARLPLCITHAPGHMLITDLLNRDLPFL HHHHHHCCEEEEECCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA