| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is hmp [H]
Identifier: 170749727
GI number: 170749727
Start: 3527208
End: 3529271
Strand: Direct
Name: hmp [H]
Synonym: Mrad2831_3326
Alternate gene names: 170749727
Gene position: 3527208-3529271 (Clockwise)
Preceding gene: 170749726
Following gene: 170749728
Centisome position: 58.03
GC content: 73.64
Gene sequence:
>2064_bases ATGGCTGACGGTCAAACCTTTGCGACGCTGCCGACCTGGCATGCCGGCGAGACGTCCATCCAGGAGTCGGTCGGCGCCGC CGACCGGATGGCGGTGATCGGCCAGAGGGTGGTGCGAGATTTCATGCCCGATCAGCACCGCGCCTTCTACGCGCAGATCC CCTTCATCGTGCTGGGCAGCGTCGACCGGCAGGGCGACGCCTGGGCCACGCTCCTGGCCGGCAGGCCCGGCTTCATCACC TCGCCCTCGGCCACGACCCTCGACATCGCCGCGCGACCGGACCCGGCCGACCCCGCGTCCGAGGGCACGCGCGCCGGCGA CGCCATCGGTCTCCTGGGGATCGAGCTGAGCAGCCGCCGCCGCAACCGCGTCAACGGCCTCGTCCGCTCCACGGACGGCG GGGTCCTGCACTTCGACGTCGATCAGAGCTTCGGGAACTGCCCGCAATACATCCAGCTGCGCGACATGACCTTCGTGGGC GAGCCGGGCGTCCCCGTCCCGGTCTCCGCCGAGGAGAGCGCCGAGCTCGACGCGTCGGCGCGCGCCCTGATCGCGGCGGC CGACACGTTCTTCGTGGCCTCCTACGCCGACCGCGAGGGCCGGCGCCAGGTCGACGTCTCGCATCGCGGCGGCAAGGCGG GGTTCGTCCGCGTCGCCGCGGACGGCACGCTGACCATCCCCGACTTCGCCGGCAACCTGTTCTTCGCCACCCTCGGGAAC ATCCTCCTGAACGGCAGGGCCGGCCTGGTCTTCACCGATTTCGAGACGGGCGATCTCCTGCAGCTGACCGGCGACGCCGC GGTGATCCTGGACTCGCCCGAGATCGCCGCGTTCCAGGGCGCCGAGCGGCTCTGGACCTTCCGGCCGCGCCGGGTGATCC GCCGGCGCGGCGCCCTGCCGCTGCGCTGGACGTTCCGGGCGGACGGCTGGTCGCCGAACGCGCTGATGACCGGCGACTGG GCGGAGGCCGCCGACCGCGTCCGGGCGACCGGGCGCGCGACGCGGTGGCGGCCGTTCCGGGTGGCGAAGATCGTCGACGA GAGCCGCACCATCCGGTCCTTCCACCTGGCACCGGACGACGGGGCCGGGCAACTCCCGCACCGCGCGGGCCAGCATCTCC CGATCCGCGTGACGCTGCCCGGGGCGGAGGCGCCGGTGATCCGGACCTACACGCTCTCGGTCGCGCCCTCGGATCCCACC TACCGGATCAGCGTGAAGCGCGACGGCGCCGTCTCGCAGCACCTCCACGACCGCCTTCGGGTCGGGGACATCGTCGAGGC GCGCGCGCCCGACGGCGGCTTCACCCTCGATGCGGGCGCGGCGCGCCCCGCGGTGCTGCTCGCCGGCGGCGTCGGGATCA CGCCGCTCCTCGCGATGCTCCGGCACGTGGTCTACGAGGGCCTGCGCACCCGCAGGATCCGCCCGACCACGCTCGTCTAC GCCGCCCGCACGCGCGCCGAGCGCGCCTTCGAGGGGGAGCTGTCCGAACTCGCCGCGGCGGCGCAGGGGGCGGTCCGGAT CGTGCGCGTCCTGAGCGACGTGTCCGATGCCCGGCCCGGCACCGATTACGAGGCCGCGGGCCGGATCGATATGGCGCTGC TCACGCGGTTCCTCGCCTTCGCGGACTACGACTTCTACCTGTGCGGCCCACCGGCTTTCACCCAGGCGCTCTACGACGGG TTGCGCGGCTACAACGTGGCGGACGACCGGATCCACGCGGAGGCGTTCGGGCCCTCGGGGCTGGTCCGCAACGCGGGGAC GGCGGTGGCCGCGCGCCCGCGCCCGCCGGCCGCCACCGAGACGGTGCCGGTCGCCTTTCTCGACACCGGTAAGGAGGCGC GCTGGACGCCGAATTCAGGCAGCCTCCTCGACCTCGCCGAAGCCCGCGGCCTCGCGCCGGATTTCAGCTGCCGCGAAGGC AGCTGCGGGACCTGCCGGACCAAGCTGCTCGCCGGCGCGGTGACCTACCTCCGGGAACCGAGCGCGCCCGTGGCGGAGGA CGAGGTGCTGATCTGCTCCGCAGTGCCCGCGGAGGGCACAGGCCGGGTGCAGCTCGCGCTCTGA
Upstream 100 bases:
>100_bases CCCTTCGCCGAGACTCCCGCGGGCCTCACGGCGGCGGCGTGACCAGAAGAGCCCCGGGCGCACCCGCGCCCGGGAGCTGG ACCGCGTGGAGGAGGCGGAG
Downstream 100 bases:
>100_bases CGCGCGGGACGGCGCGGCCCGCGCCGTTTTCCACCTTCCGCGCCCGGCGGCGCCGGATCATTCTGCGCAGCGCCGATACC GGAGCCGGGCTGAACCTTCA
Product: oxidoreductase FAD/NAD(P)-binding subunit
Products: NA
Alternate protein names: Flavohemoglobin; Hemoglobin-like protein; Nitric oxide dioxygenase; NO oxygenase; NOD [H]
Number of amino acids: Translated: 687; Mature: 686
Protein sequence:
>687_residues MADGQTFATLPTWHAGETSIQESVGAADRMAVIGQRVVRDFMPDQHRAFYAQIPFIVLGSVDRQGDAWATLLAGRPGFIT SPSATTLDIAARPDPADPASEGTRAGDAIGLLGIELSSRRRNRVNGLVRSTDGGVLHFDVDQSFGNCPQYIQLRDMTFVG EPGVPVPVSAEESAELDASARALIAAADTFFVASYADREGRRQVDVSHRGGKAGFVRVAADGTLTIPDFAGNLFFATLGN ILLNGRAGLVFTDFETGDLLQLTGDAAVILDSPEIAAFQGAERLWTFRPRRVIRRRGALPLRWTFRADGWSPNALMTGDW AEAADRVRATGRATRWRPFRVAKIVDESRTIRSFHLAPDDGAGQLPHRAGQHLPIRVTLPGAEAPVIRTYTLSVAPSDPT YRISVKRDGAVSQHLHDRLRVGDIVEARAPDGGFTLDAGAARPAVLLAGGVGITPLLAMLRHVVYEGLRTRRIRPTTLVY AARTRAERAFEGELSELAAAAQGAVRIVRVLSDVSDARPGTDYEAAGRIDMALLTRFLAFADYDFYLCGPPAFTQALYDG LRGYNVADDRIHAEAFGPSGLVRNAGTAVAARPRPPAATETVPVAFLDTGKEARWTPNSGSLLDLAEARGLAPDFSCREG SCGTCRTKLLAGAVTYLREPSAPVAEDEVLICSAVPAEGTGRVQLAL
Sequences:
>Translated_687_residues MADGQTFATLPTWHAGETSIQESVGAADRMAVIGQRVVRDFMPDQHRAFYAQIPFIVLGSVDRQGDAWATLLAGRPGFIT SPSATTLDIAARPDPADPASEGTRAGDAIGLLGIELSSRRRNRVNGLVRSTDGGVLHFDVDQSFGNCPQYIQLRDMTFVG EPGVPVPVSAEESAELDASARALIAAADTFFVASYADREGRRQVDVSHRGGKAGFVRVAADGTLTIPDFAGNLFFATLGN ILLNGRAGLVFTDFETGDLLQLTGDAAVILDSPEIAAFQGAERLWTFRPRRVIRRRGALPLRWTFRADGWSPNALMTGDW AEAADRVRATGRATRWRPFRVAKIVDESRTIRSFHLAPDDGAGQLPHRAGQHLPIRVTLPGAEAPVIRTYTLSVAPSDPT YRISVKRDGAVSQHLHDRLRVGDIVEARAPDGGFTLDAGAARPAVLLAGGVGITPLLAMLRHVVYEGLRTRRIRPTTLVY AARTRAERAFEGELSELAAAAQGAVRIVRVLSDVSDARPGTDYEAAGRIDMALLTRFLAFADYDFYLCGPPAFTQALYDG LRGYNVADDRIHAEAFGPSGLVRNAGTAVAARPRPPAATETVPVAFLDTGKEARWTPNSGSLLDLAEARGLAPDFSCREG SCGTCRTKLLAGAVTYLREPSAPVAEDEVLICSAVPAEGTGRVQLAL >Mature_686_residues ADGQTFATLPTWHAGETSIQESVGAADRMAVIGQRVVRDFMPDQHRAFYAQIPFIVLGSVDRQGDAWATLLAGRPGFITS PSATTLDIAARPDPADPASEGTRAGDAIGLLGIELSSRRRNRVNGLVRSTDGGVLHFDVDQSFGNCPQYIQLRDMTFVGE PGVPVPVSAEESAELDASARALIAAADTFFVASYADREGRRQVDVSHRGGKAGFVRVAADGTLTIPDFAGNLFFATLGNI LLNGRAGLVFTDFETGDLLQLTGDAAVILDSPEIAAFQGAERLWTFRPRRVIRRRGALPLRWTFRADGWSPNALMTGDWA EAADRVRATGRATRWRPFRVAKIVDESRTIRSFHLAPDDGAGQLPHRAGQHLPIRVTLPGAEAPVIRTYTLSVAPSDPTY RISVKRDGAVSQHLHDRLRVGDIVEARAPDGGFTLDAGAARPAVLLAGGVGITPLLAMLRHVVYEGLRTRRIRPTTLVYA ARTRAERAFEGELSELAAAAQGAVRIVRVLSDVSDARPGTDYEAAGRIDMALLTRFLAFADYDFYLCGPPAFTQALYDGL RGYNVADDRIHAEAFGPSGLVRNAGTAVAARPRPPAATETVPVAFLDTGKEARWTPNSGSLLDLAEARGLAPDFSCREGS CGTCRTKLLAGAVTYLREPSAPVAEDEVLICSAVPAEGTGRVQLAL
Specific function: Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a centra
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788903, Length=248, Percent_Identity=31.8548387096774, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1787658, Length=355, Percent_Identity=26.4788732394366, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI1787098, Length=347, Percent_Identity=26.2247838616715, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI1788104, Length=352, Percent_Identity=24.4318181818182, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6321673, Length=265, Percent_Identity=30.188679245283, Blast_Score=97, Evalue=7e-21,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017927 - InterPro: IPR012292 - InterPro: IPR009050 - InterPro: IPR000971 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00042 Globin; PF00175 NAD_binding_1 [H]
EC number: =1.14.12.17 [H]
Molecular weight: Translated: 73641; Mature: 73510
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGQTFATLPTWHAGETSIQESVGAADRMAVIGQRVVRDFMPDQHRAFYAQIPFIVLGS CCCCCEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEC VDRQGDAWATLLAGRPGFITSPSATTLDIAARPDPADPASEGTRAGDAIGLLGIELSSRR CCCCCCCEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECHHH RNRVNGLVRSTDGGVLHFDVDQSFGNCPQYIQLRDMTFVGEPGVPVPVSAEESAELDASA HHHHCCEEEECCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCH RALIAAADTFFVASYADREGRRQVDVSHRGGKAGFVRVAADGTLTIPDFAGNLFFATLGN HEEEEEHHHEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCCCHHHHHHHH ILLNGRAGLVFTDFETGDLLQLTGDAAVILDSPEIAAFQGAERLWTFRPRRVIRRRGALP HEECCCCCEEEEECCCCCEEEECCCEEEEECCCCHHHHCCCHHHHCCCHHHHHHHCCCCC LRWTFRADGWSPNALMTGDWAEAADRVRATGRATRWRPFRVAKIVDESRTIRSFHLAPDD EEEEEEECCCCCCCEECCCHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCEEEEECCCCC GAGQLPHRAGQHLPIRVTLPGAEAPVIRTYTLSVAPSDPTYRISVKRDGAVSQHLHDRLR CCCCCCHHCCCCCEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHH VGDIVEARAPDGGFTLDAGAARPAVLLAGGVGITPLLAMLRHVVYEGLRTRRIRPTTLVY HCCEEECCCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE AARTRAERAFEGELSELAAAAQGAVRIVRVLSDVSDARPGTDYEAAGRIDMALLTRFLAF EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ADYDFYLCGPPAFTQALYDGLRGYNVADDRIHAEAFGPSGLVRNAGTAVAARPRPPAATE HCCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHCCCCCEEEECCCCCCCCC TVPVAFLDTGKEARWTPNSGSLLDLAEARGLAPDFSCREGSCGTCRTKLLAGAVTYLREP CEEEEEEECCCCCEECCCCCCEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC SAPVAEDEVLICSAVPAEGTGRVQLAL CCCCCCCCEEEEEECCCCCCCCEEEEC >Mature Secondary Structure ADGQTFATLPTWHAGETSIQESVGAADRMAVIGQRVVRDFMPDQHRAFYAQIPFIVLGS CCCCEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEC VDRQGDAWATLLAGRPGFITSPSATTLDIAARPDPADPASEGTRAGDAIGLLGIELSSRR CCCCCCCEEEEECCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECHHH RNRVNGLVRSTDGGVLHFDVDQSFGNCPQYIQLRDMTFVGEPGVPVPVSAEESAELDASA HHHHCCEEEECCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCH RALIAAADTFFVASYADREGRRQVDVSHRGGKAGFVRVAADGTLTIPDFAGNLFFATLGN HEEEEEHHHEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCCCHHHHHHHH ILLNGRAGLVFTDFETGDLLQLTGDAAVILDSPEIAAFQGAERLWTFRPRRVIRRRGALP HEECCCCCEEEEECCCCCEEEECCCEEEEECCCCHHHHCCCHHHHCCCHHHHHHHCCCCC LRWTFRADGWSPNALMTGDWAEAADRVRATGRATRWRPFRVAKIVDESRTIRSFHLAPDD EEEEEEECCCCCCCEECCCHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCEEEEECCCCC GAGQLPHRAGQHLPIRVTLPGAEAPVIRTYTLSVAPSDPTYRISVKRDGAVSQHLHDRLR CCCCCCHHCCCCCEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHH VGDIVEARAPDGGFTLDAGAARPAVLLAGGVGITPLLAMLRHVVYEGLRTRRIRPTTLVY HCCEEECCCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE AARTRAERAFEGELSELAAAAQGAVRIVRVLSDVSDARPGTDYEAAGRIDMALLTRFLAF EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ADYDFYLCGPPAFTQALYDGLRGYNVADDRIHAEAFGPSGLVRNAGTAVAARPRPPAATE HCCCEEEECCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHCCCCCEEEECCCCCCCCC TVPVAFLDTGKEARWTPNSGSLLDLAEARGLAPDFSCREGSCGTCRTKLLAGAVTYLREP CEEEEEEECCCCCEECCCCCCEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC SAPVAEDEVLICSAVPAEGTGRVQLAL CCCCCCCCEEEEEECCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8682784; 9384377 [H]