Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 170749702

GI number: 170749702

Start: 3502009

End: 3502716

Strand: Direct

Name: ydfH [C]

Synonym: Mrad2831_3301

Alternate gene names: 170749702

Gene position: 3502009-3502716 (Clockwise)

Preceding gene: 170749698

Following gene: 170749704

Centisome position: 57.62

GC content: 74.86

Gene sequence:

>708_bases
ATGAAGGCGACGGACGAGGGCGATCGCGTGGGCGCGATCTGCCAGGGCCTGCGACGGGCCATCGTGGAACGGGCGCTCGC
CCCCGGCGACCGCCTGCCGGAGGACGCCCTCGGCGAGCGGTTCGGGGTGAGCCGCACCATCGCGCGGCAAGCCCTGCTGC
GGCTCGCCGGCGAGGGCTTGGTCGACCTGCGCCGCAACCGCATCGCCGTCGTGGCGACGCCGAGCTGGGAGGAGGCGCGC
GACACCTTCGACGTGCGCGTCGGCTTGGAGCGGCTGGTGGTACGCCGCCTCGCCGGGCAGCTCAGCCCGGAGCAGCGCCA
GGTTCTGCTGGACCAGATCGCCCGCGAGGAGGCCGCCCGGGGCGGGCCGGAGGCGCTGTCGATCCGCCTCGCCACGGAAT
TCCACCTGATGCTCGCCGAGATGACCGGCAGCGCCGTGCTGACCCGCTACGTCGCCGAACTCGGCTATCGCTGCGCCCTG
ATCCTGTCCCTGTACAGCCGGCCGCACTCCTCGGACTGCGCCGTGAGCGAGCACCGCGACATCGTCGCCGCCCTGGTCGC
GGGCGATGCCGAGCGCGCCGCCACGCTCATGGACCACCACCTCGACGCCGTCGCCGAGCGGGCGCGCATCGTGCCGCCGA
CCCCGCGCGAGCGCGATCTCGCCCGCCTGCTGGCGCCCTACGTCGCGGGTGCCGGTCGCGGAGCCTGA

Upstream 100 bases:

>100_bases
TCGGGCACAGGCCCGGACGCGTCGCGATGGATCGCACCCGAGGGAGGATCATGACGGTTCAGTCCGCGCGGATACGGACG
ACAGAGTCCAGGCGCCGTCC

Downstream 100 bases:

>100_bases
CCTCCCGCCTCAGGCCGTGAGGCCGTGCTTCGTCAGCAGGCGCTCGGCGCTGTCGTTCCAGACCTCCATGCCGACGATCA
GGCCGTCGCGCACGGTGAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; Bacterial Regulatory Protein; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; FCD Domain Protein; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKATDEGDRVGAICQGLRRAIVERALAPGDRLPEDALGERFGVSRTIARQALLRLAGEGLVDLRRNRIAVVATPSWEEAR
DTFDVRVGLERLVVRRLAGQLSPEQRQVLLDQIAREEAARGGPEALSIRLATEFHLMLAEMTGSAVLTRYVAELGYRCAL
ILSLYSRPHSSDCAVSEHRDIVAALVAGDAERAATLMDHHLDAVAERARIVPPTPRERDLARLLAPYVAGAGRGA

Sequences:

>Translated_235_residues
MKATDEGDRVGAICQGLRRAIVERALAPGDRLPEDALGERFGVSRTIARQALLRLAGEGLVDLRRNRIAVVATPSWEEAR
DTFDVRVGLERLVVRRLAGQLSPEQRQVLLDQIAREEAARGGPEALSIRLATEFHLMLAEMTGSAVLTRYVAELGYRCAL
ILSLYSRPHSSDCAVSEHRDIVAALVAGDAERAATLMDHHLDAVAERARIVPPTPRERDLARLLAPYVAGAGRGA
>Mature_235_residues
MKATDEGDRVGAICQGLRRAIVERALAPGDRLPEDALGERFGVSRTIARQALLRLAGEGLVDLRRNRIAVVATPSWEEAR
DTFDVRVGLERLVVRRLAGQLSPEQRQVLLDQIAREEAARGGPEALSIRLATEFHLMLAEMTGSAVLTRYVAELGYRCAL
ILSLYSRPHSSDCAVSEHRDIVAALVAGDAERAATLMDHHLDAVAERARIVPPTPRERDLARLLAPYVAGAGRGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=27.6381909547739, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25598; Mature: 25598

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATDEGDRVGAICQGLRRAIVERALAPGDRLPEDALGERFGVSRTIARQALLRLAGEGL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCH
VDLRRNRIAVVATPSWEEARDTFDVRVGLERLVVRRLAGQLSPEQRQVLLDQIAREEAAR
HHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
GGPEALSIRLATEFHLMLAEMTGSAVLTRYVAELGYRCALILSLYSRPHSSDCAVSEHRD
CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IVAALVAGDAERAATLMDHHLDAVAERARIVPPTPRERDLARLLAPYVAGAGRGA
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKATDEGDRVGAICQGLRRAIVERALAPGDRLPEDALGERFGVSRTIARQALLRLAGEGL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCH
VDLRRNRIAVVATPSWEEARDTFDVRVGLERLVVRRLAGQLSPEQRQVLLDQIAREEAAR
HHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
GGPEALSIRLATEFHLMLAEMTGSAVLTRYVAELGYRCALILSLYSRPHSSDCAVSEHRD
CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IVAALVAGDAERAATLMDHHLDAVAERARIVPPTPRERDLARLLAPYVAGAGRGA
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA