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The map label for this gene is ydhC [H]

Identifier: 170749650

GI number: 170749650

Start: 3441492

End: 3442184

Strand: Reverse

Name: ydhC [H]

Synonym: Mrad2831_3247

Alternate gene names: 170749650

Gene position: 3442184-3441492 (Counterclockwise)

Preceding gene: 170749651

Following gene: 170749649

Centisome position: 56.64

GC content: 71.28

Gene sequence:

>693_bases
ATGAACAAGATCAGCGCCATCCAGCCGGACACGCTCCGTCGCAAGGTCGAGGACGCCGTCCGCGAGGCGATCACCTCGGG
CGTCTACGCCCCCGGCGAGCGGCTGATCGAGCGCGAATTGTGCGAGGGGCTCGGCGTCAGCCGCGCCTCCGTGCGCGAGG
CCCTGCGCCGGCTCGAGGCCGAGAAGCTCGTCCACACGGTGCCGCATCGCGGCCCGGTCGTGGCCTCGATCTCGGTGGAG
GAGGCGCGTCAGCTCTACGCACTGCGCGCCGTCCTCGAGGGCTACGCGGCGCACGAATTCGCCACGCAGGCCGCGGATGC
CGCCATCCTGCAGTTCGGGCGGGCCGCGGCGGATCTGCGCGAGGCCGCCGGCAGCGGCGACACGGACCGCGTCCTGCGCG
CCAAGGGCATCCTGTACGACGTCATGCTCAGCCATTGCGGCAACGATCTCGTCCGCGAGATCCTCCGCGGCTTCTACTCC
CGGATCAACCTGCTGCGGGCGACATCCCTGATGCATCCGGAGCGGCTGCCGCACAGCCTCGCCGAGATCGACGCCCTCGT
GGCCGCTTTCCAGAAGCGGGACGCCGCGCAGGCGGAGCAGCTGGCCCGCCTCCACGTCACCAACGCGTGCGCGGTCGCCC
TGAAGCAGCTCGCGTCTCGGAACGCGCAGACGCCTCTCGACGCGGTGAGCTGA

Upstream 100 bases:

>100_bases
CGGGGCCGGGGCTGACGGGCGCGCTGCGGGGCATGCCTTGCCACCCGAGGCCGCGCCATGTCACCCGTGCGGCCCAGCCG
CGATCCCCGAACACCCAGCG

Downstream 100 bases:

>100_bases
GCCGAAGCCCCTCGGCCGCGAGCCCGCCCGTCCTTCGGCCGACCCGCTGACAGGATCCGGTGCCAGTCGCCGGCGATGGC
CGACCAGCCATGCCGCCAGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNKISAIQPDTLRRKVEDAVREAITSGVYAPGERLIERELCEGLGVSRASVREALRRLEAEKLVHTVPHRGPVVASISVE
EARQLYALRAVLEGYAAHEFATQAADAAILQFGRAAADLREAAGSGDTDRVLRAKGILYDVMLSHCGNDLVREILRGFYS
RINLLRATSLMHPERLPHSLAEIDALVAAFQKRDAAQAEQLARLHVTNACAVALKQLASRNAQTPLDAVS

Sequences:

>Translated_230_residues
MNKISAIQPDTLRRKVEDAVREAITSGVYAPGERLIERELCEGLGVSRASVREALRRLEAEKLVHTVPHRGPVVASISVE
EARQLYALRAVLEGYAAHEFATQAADAAILQFGRAAADLREAAGSGDTDRVLRAKGILYDVMLSHCGNDLVREILRGFYS
RINLLRATSLMHPERLPHSLAEIDALVAAFQKRDAAQAEQLARLHVTNACAVALKQLASRNAQTPLDAVS
>Mature_230_residues
MNKISAIQPDTLRRKVEDAVREAITSGVYAPGERLIERELCEGLGVSRASVREALRRLEAEKLVHTVPHRGPVVASISVE
EARQLYALRAVLEGYAAHEFATQAADAAILQFGRAAADLREAAGSGDTDRVLRAKGILYDVMLSHCGNDLVREILRGFYS
RINLLRATSLMHPERLPHSLAEIDALVAAFQKRDAAQAEQLARLHVTNACAVALKQLASRNAQTPLDAVS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25079; Mature: 25079

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKISAIQPDTLRRKVEDAVREAITSGVYAPGERLIERELCEGLGVSRASVREALRRLEA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EKLVHTVPHRGPVVASISVEEARQLYALRAVLEGYAAHEFATQAADAAILQFGRAAADLR
HHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAGSGDTDRVLRAKGILYDVMLSHCGNDLVREILRGFYSRINLLRATSLMHPERLPHSL
HHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AEIDALVAAFQKRDAAQAEQLARLHVTNACAVALKQLASRNAQTPLDAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNKISAIQPDTLRRKVEDAVREAITSGVYAPGERLIERELCEGLGVSRASVREALRRLEA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EKLVHTVPHRGPVVASISVEEARQLYALRAVLEGYAAHEFATQAADAAILQFGRAAADLR
HHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAGSGDTDRVLRAKGILYDVMLSHCGNDLVREILRGFYSRINLLRATSLMHPERLPHSL
HHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AEIDALVAAFQKRDAAQAEQLARLHVTNACAVALKQLASRNAQTPLDAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]