| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is fct [H]
Identifier: 170749636
GI number: 170749636
Start: 3421129
End: 3423345
Strand: Reverse
Name: fct [H]
Synonym: Mrad2831_3233
Alternate gene names: 170749636
Gene position: 3423345-3421129 (Counterclockwise)
Preceding gene: 170749637
Following gene: 170749635
Centisome position: 56.33
GC content: 66.26
Gene sequence:
>2217_bases ATGTCGTATCGCTCGCTCCTCACCCTCCTCCTCGCCACCACTGCTCTCGCCGGGCCCGCGAGGGCGCAGGACGGCTCCGT TCAGCTCAACGAGATCTCGGTCGAAGCGGCGTCGCCCGGCAATTCCGCCCCCGGCCTGACGGGCTCGGGCGGCCTCAACG TGAGCGGGGGCGACGGCGGTACGGCAAGCACCAGCGGCGGCGGTGGCGGTCCGTCCGGGATCACCGGTTACACCGCCCGG GTCGCCACGACCGCAACGAAAACCAACACGCCGCTGATCGAGGTCCCCCAGTCCGTGTCGGTGGTCACCCGCGAGCAGCT GAACGACCGCAACGTTCAGACCTTCACCGACGCGGTCAACTACGTCCCCGGCGCCGTATCCGCCCGGTCCGGCTTCGATC CGCGGTTCGATCAGATCTTCATCCGCGGCTTCGACGTGCTGACCAATCAGGGAATCTACCGAGACGGGTTGCGCGTGATC GGGACCGGCTTCGCCTACCCGAAAAGCGAGCCCTACGGCGCGGAGGCGCTCACCATCCTGCGCGGGCCCGCCTCCGGCCT CTACGGCCTCGGCTCGCCCGGCGGCATCCTCGACATCACGACCAAGCGTCCCGTCTTCGCGCCGTTCGGCGAGGTGCAGT TCCAAGCCGGCAGCTTCGACCGCTTCCAGGGCAACTTCGACGTCGGGGGGCCGATCGAGGGTTCGGGCGGCACCATGGCC TACCGTCTCACCGGCGTGCGCCGCGAGGCGGGCACCTTCATCGGTCTGGGCACGACCGACGACCAGCTCTATCTCGCTCC CGCGTTCACCTGGAAACCGTCGGCTGATACCACATTCACGTTCCTCAGCGAGTTTCAGGTCACGAATACGCCGGCGGCGA CGTTCTTTTACAATGACCCGGGCTTTCGGGTGTCCAAGTTCTACCAGGGCGACCCGCGCTTCATCGGCCTCGACCAGACG CAGTACAGGGTCGGCTACGCCTTCGAGCACTTCATCACGCCGGACCTCATTTTTCGCCAGAATTTCCGGCACTACGGGCT ATTCCTGAGCGCCAAGTACGTCGACATCAACAACATCAACGAAGCACGCACGATCGGCATGCGCGATACGGGCTACATTC GCGAGGGCCTGGTGCAGCAGACGCTGGACAACCAGCTGGAAGCCCGCTTCGCTACAGGCCCGGTCGCGCACACCGTGGTC GGCGGCGTCGACTACGCCCGGTACAGCCTGAGCGCACGCTTCGGGTTCGGACTGGCTCCGGACCTCAACCTCGTCACGCG GAATTACGGCCAGCAGCTCATCCCGACGCCCCCCCTGGCGCCCGCGTCGCGCCAGAGCCAGGACCAGATCGGTGTCTACC TGCAGGATCAAGCCAAGTTCGGAAACTTCATCCTGACGCTGAACGGGCGGCACGACTGGGTCTTCCAGAACAACTACGCG ACGCCGGACAGCGCGGTCTCACGTCAGGACAACAGCGCCTTCACGGGCCGGGTCGGCCTGGGCTACGTCCTGGCACCGGG GCTGGTGCCCTACGCCAGCTACGCCACGACCTTCACGCCGCAGGTGGGCATCGACCGGAACGGGCAGGCGTTCAAGCCCG CCACGGGCGACCAGATCGAGGCCGGGGTCAAGTACCTGATCCCCGGCACCAATATCCAGACGGCGTTCGCCGGCTTCGAC ATCAACCAGTCGAACATCCTGATCCCCGACGCGGGCAACCTCGCGTTCCAGACCGCCGGCGGCGCCGTGCGCTCGACGGG CTTCGAGGCCGAGGCCACGGCCAACCTCGCGCCGGGCACGAACCTGACGATCGCCTACACACACGTCGACATCCGGTTCG TGAACTCGGTCTCGGCCACCGGTCAGCCGATCGCCGGGAACCGCGTGTCCGGCATCCCCAGCGACACCTACGCGTCGTTC CTGACCTACGCCTTCCCGCCTTCCTCGGCCCTGCGCGGTCTGCAGATCGGCGGCGGCATCCGCTTCATCGGATCCAGCTT CGCCGACGACCAGAACACGGTGCGCAACACCGCGGTCACCCTCTACGACGCGCTGGTCGCCTACGACTTCGCGGCGCTGG ATCCGAAGTACAAGGGCTTCCGGGCGCAGATCAACGCCTACAATATCTTCGACCGTAACTACACGACCTGCTCGTTCGGG TTCTGCAACTTCAACCAGCCGGCACGAGTCATCGGTAGCCTGATCTATCGCTGGTGA
Upstream 100 bases:
>100_bases GTAAGTGTGTGATCTATAACACGTTTTCGGCTTGATCAACGATCCGTGAACGGCGAACACGTGGGCACTGCGCCGCCGGA GGCGCTCGTCAGCGTGATCT
Downstream 100 bases:
>100_bases GAGCGTCCATCTCCGGCGCCTGCGTGTTCCGAGGCCCGGCCTCCAGGAGGACACGACGATCGTGGCCCGCCGCGCGGCGG GCCACGATCGCGATGGCGGG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 738; Mature: 737
Protein sequence:
>738_residues MSYRSLLTLLLATTALAGPARAQDGSVQLNEISVEAASPGNSAPGLTGSGGLNVSGGDGGTASTSGGGGGPSGITGYTAR VATTATKTNTPLIEVPQSVSVVTREQLNDRNVQTFTDAVNYVPGAVSARSGFDPRFDQIFIRGFDVLTNQGIYRDGLRVI GTGFAYPKSEPYGAEALTILRGPASGLYGLGSPGGILDITTKRPVFAPFGEVQFQAGSFDRFQGNFDVGGPIEGSGGTMA YRLTGVRREAGTFIGLGTTDDQLYLAPAFTWKPSADTTFTFLSEFQVTNTPAATFFYNDPGFRVSKFYQGDPRFIGLDQT QYRVGYAFEHFITPDLIFRQNFRHYGLFLSAKYVDINNINEARTIGMRDTGYIREGLVQQTLDNQLEARFATGPVAHTVV GGVDYARYSLSARFGFGLAPDLNLVTRNYGQQLIPTPPLAPASRQSQDQIGVYLQDQAKFGNFILTLNGRHDWVFQNNYA TPDSAVSRQDNSAFTGRVGLGYVLAPGLVPYASYATTFTPQVGIDRNGQAFKPATGDQIEAGVKYLIPGTNIQTAFAGFD INQSNILIPDAGNLAFQTAGGAVRSTGFEAEATANLAPGTNLTIAYTHVDIRFVNSVSATGQPIAGNRVSGIPSDTYASF LTYAFPPSSALRGLQIGGGIRFIGSSFADDQNTVRNTAVTLYDALVAYDFAALDPKYKGFRAQINAYNIFDRNYTTCSFG FCNFNQPARVIGSLIYRW
Sequences:
>Translated_738_residues MSYRSLLTLLLATTALAGPARAQDGSVQLNEISVEAASPGNSAPGLTGSGGLNVSGGDGGTASTSGGGGGPSGITGYTAR VATTATKTNTPLIEVPQSVSVVTREQLNDRNVQTFTDAVNYVPGAVSARSGFDPRFDQIFIRGFDVLTNQGIYRDGLRVI GTGFAYPKSEPYGAEALTILRGPASGLYGLGSPGGILDITTKRPVFAPFGEVQFQAGSFDRFQGNFDVGGPIEGSGGTMA YRLTGVRREAGTFIGLGTTDDQLYLAPAFTWKPSADTTFTFLSEFQVTNTPAATFFYNDPGFRVSKFYQGDPRFIGLDQT QYRVGYAFEHFITPDLIFRQNFRHYGLFLSAKYVDINNINEARTIGMRDTGYIREGLVQQTLDNQLEARFATGPVAHTVV GGVDYARYSLSARFGFGLAPDLNLVTRNYGQQLIPTPPLAPASRQSQDQIGVYLQDQAKFGNFILTLNGRHDWVFQNNYA TPDSAVSRQDNSAFTGRVGLGYVLAPGLVPYASYATTFTPQVGIDRNGQAFKPATGDQIEAGVKYLIPGTNIQTAFAGFD INQSNILIPDAGNLAFQTAGGAVRSTGFEAEATANLAPGTNLTIAYTHVDIRFVNSVSATGQPIAGNRVSGIPSDTYASF LTYAFPPSSALRGLQIGGGIRFIGSSFADDQNTVRNTAVTLYDALVAYDFAALDPKYKGFRAQINAYNIFDRNYTTCSFG FCNFNQPARVIGSLIYRW >Mature_737_residues SYRSLLTLLLATTALAGPARAQDGSVQLNEISVEAASPGNSAPGLTGSGGLNVSGGDGGTASTSGGGGGPSGITGYTARV ATTATKTNTPLIEVPQSVSVVTREQLNDRNVQTFTDAVNYVPGAVSARSGFDPRFDQIFIRGFDVLTNQGIYRDGLRVIG TGFAYPKSEPYGAEALTILRGPASGLYGLGSPGGILDITTKRPVFAPFGEVQFQAGSFDRFQGNFDVGGPIEGSGGTMAY RLTGVRREAGTFIGLGTTDDQLYLAPAFTWKPSADTTFTFLSEFQVTNTPAATFFYNDPGFRVSKFYQGDPRFIGLDQTQ YRVGYAFEHFITPDLIFRQNFRHYGLFLSAKYVDINNINEARTIGMRDTGYIREGLVQQTLDNQLEARFATGPVAHTVVG GVDYARYSLSARFGFGLAPDLNLVTRNYGQQLIPTPPLAPASRQSQDQIGVYLQDQAKFGNFILTLNGRHDWVFQNNYAT PDSAVSRQDNSAFTGRVGLGYVLAPGLVPYASYATTFTPQVGIDRNGQAFKPATGDQIEAGVKYLIPGTNIQTAFAGFDI NQSNILIPDAGNLAFQTAGGAVRSTGFEAEATANLAPGTNLTIAYTHVDIRFVNSVSATGQPIAGNRVSGIPSDTYASFL TYAFPPSSALRGLQIGGGIRFIGSSFADDQNTVRNTAVTLYDALVAYDFAALDPKYKGFRAQINAYNIFDRNYTTCSFGF CNFNQPARVIGSLIYRW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=698, Percent_Identity=31.6618911174785, Blast_Score=309, Evalue=3e-85, Organism=Escherichia coli, GI1787344, Length=244, Percent_Identity=28.6885245901639, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79082; Mature: 78951
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYRSLLTLLLATTALAGPARAQDGSVQLNEISVEAASPGNSAPGLTGSGGLNVSGGDGG CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCC TASTSGGGGGPSGITGYTARVATTATKTNTPLIEVPQSVSVVTREQLNDRNVQTFTDAVN CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHH YVPGAVSARSGFDPRFDQIFIRGFDVLTNQGIYRDGLRVIGTGFAYPKSEPYGAEALTIL HCCCCCCCCCCCCCCHHEEEEEEEHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEE RGPASGLYGLGSPGGILDITTKRPVFAPFGEVQFQAGSFDRFQGNFDVGGPIEGSGGTMA ECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCEEE YRLTGVRREAGTFIGLGTTDDQLYLAPAFTWKPSADTTFTFLSEFQVTNTPAATFFYNDP EEEEEEECCCCCEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCC GFRVSKFYQGDPRFIGLDQTQYRVGYAFEHFITPDLIFRQNFRHYGLFLSAKYVDINNIN CCEEEEEECCCCCEEECCCCEEEEEEEEHHHCCCHHHHHCCCCEEEEEEEEEEEECCCCC EARTIGMRDTGYIREGLVQQTLDNQLEARFATGPVAHTVVGGVDYARYSLSARFGFGLAP CCEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCHHEEEEEEEECCCCCCC DLNLVTRNYGQQLIPTPPLAPASRQSQDQIGVYLQDQAKFGNFILTLNGRHDWVFQNNYA CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEEECCCC TPDSAVSRQDNSAFTGRVGLGYVLAPGLVPYASYATTFTPQVGIDRNGQAFKPATGDQIE CCCHHHCCCCCCEEECCCCCCEEECCCCCCHHHHHEECCCCCCCCCCCCEECCCCCCHHH AGVKYLIPGTNIQTAFAGFDINQSNILIPDAGNLAFQTAGGAVRSTGFEAEATANLAPGT CCCEEEECCCCCEEEEEEEECCCCCEEEECCCCEEEEECCCCEECCCCCCCCCCCCCCCC NLTIAYTHVDIRFVNSVSATGQPIAGNRVSGIPSDTYASFLTYAFPPSSALRGLQIGGGI CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEEECCCHHHCCCEEECCCE RFIGSSFADDQNTVRNTAVTLYDALVAYDFAALDPKYKGFRAQINAYNIFDRNYTTCSFG EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCEEEEE FCNFNQPARVIGSLIYRW ECCCCCHHHHHHHHHHCC >Mature Secondary Structure SYRSLLTLLLATTALAGPARAQDGSVQLNEISVEAASPGNSAPGLTGSGGLNVSGGDGG CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCC TASTSGGGGGPSGITGYTARVATTATKTNTPLIEVPQSVSVVTREQLNDRNVQTFTDAVN CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHH YVPGAVSARSGFDPRFDQIFIRGFDVLTNQGIYRDGLRVIGTGFAYPKSEPYGAEALTIL HCCCCCCCCCCCCCCHHEEEEEEEHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEE RGPASGLYGLGSPGGILDITTKRPVFAPFGEVQFQAGSFDRFQGNFDVGGPIEGSGGTMA ECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCEEE YRLTGVRREAGTFIGLGTTDDQLYLAPAFTWKPSADTTFTFLSEFQVTNTPAATFFYNDP EEEEEEECCCCCEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCC GFRVSKFYQGDPRFIGLDQTQYRVGYAFEHFITPDLIFRQNFRHYGLFLSAKYVDINNIN CCEEEEEECCCCCEEECCCCEEEEEEEEHHHCCCHHHHHCCCCEEEEEEEEEEEECCCCC EARTIGMRDTGYIREGLVQQTLDNQLEARFATGPVAHTVVGGVDYARYSLSARFGFGLAP CCEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCHHEEEEEEEECCCCCCC DLNLVTRNYGQQLIPTPPLAPASRQSQDQIGVYLQDQAKFGNFILTLNGRHDWVFQNNYA CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEEECCCC TPDSAVSRQDNSAFTGRVGLGYVLAPGLVPYASYATTFTPQVGIDRNGQAFKPATGDQIE CCCHHHCCCCCCEEECCCCCCEEECCCCCCHHHHHEECCCCCCCCCCCCEECCCCCCHHH AGVKYLIPGTNIQTAFAGFDINQSNILIPDAGNLAFQTAGGAVRSTGFEAEATANLAPGT CCCEEEECCCCCEEEEEEEECCCCCEEEECCCCEEEEECCCCEECCCCCCCCCCCCCCCC NLTIAYTHVDIRFVNSVSATGQPIAGNRVSGIPSDTYASFLTYAFPPSSALRGLQIGGGI CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEEECCCHHHCCCEEECCCE RFIGSSFADDQNTVRNTAVTLYDALVAYDFAALDPKYKGFRAQINAYNIFDRNYTTCSFG EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCEEEEE FCNFNQPARVIGSLIYRW ECCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]