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The map label for this gene is pecT [H]

Identifier: 170749581

GI number: 170749581

Start: 3356315

End: 3357184

Strand: Reverse

Name: pecT [H]

Synonym: Mrad2831_3176

Alternate gene names: 170749581

Gene position: 3357184-3356315 (Counterclockwise)

Preceding gene: 170749584

Following gene: 170749580

Centisome position: 55.24

GC content: 73.22

Gene sequence:

>870_bases
ATGATAGGCAACCTGAACATCGAGCTGCTGCGCTCGTTCCTGGCGGTCGTCGAGAGCAGCAGCTTCACGGCCGCGGCCCA
GGCGCTCGGCCTCCGGCAATCCACCGTGAGCGGGCACATCGCGCGGCTGGAGCAGGCTCTCGGTCGGCCGCTCCTGACGC
GGGACACGCACCGGGTCGCTCCGACGCCGGACGGCCAGGCCATGATCGGCTTCGCCCGCGAGGTGGTGGACGCGCAGGAC
CGGCTGCGCGCCTTCTTCTCGCCGGGCGGCCTGCGCGGCCGCATCCGTCTCGGCGTCTCCGAGGACTACACCCTGTCGAC
CCTGGCGCAGGTGCTGGCCCGCTTCGCCGGTCGGCACGACGCGGTCGATCTCCAGATCACGGTCGGGCTGAGCCGCACCC
TCTACCAGGGCTACGACGCGGGCGAGCTCGACGTGATCTTCTGCAAGCGCCGGCGCGGCGATCCGCGCGGAACCTTGGCC
TGGACCGAGGACCTGATCTGGACGGGCCGGCCCGGCTTCGTCCCGGATCCGGCCAAGCCCTTGCCCCTGGTGCTCTACCC
GCCGCCCTCGATGACCCGCACGCTGGCGCTCGACGCCCTCGAGACGGTGGGCCGGTCCTGGCGAGTGGTATGCACGAGCG
GCAGCCTGATGGGCTTGCGGGCCGCCGTCGAGGCCGGCCTGGGCATCGCGCCGCACTCGGCCAAGGTCATGCCGCCAGGC
CTCGCCGCGATCCCCGGGGCGTTCGGCCTGCCTCCGCTCGGCGCGGTCGAGTTCGTCGTGTTGGGCCCGGGGCGCCAGCA
CGCGGCGGCGACCGCGCTGCAGGAGACGATCCTGGCGAGCACGGGCGAGCTTCAGGGCGCCGCGCACTAG

Upstream 100 bases:

>100_bases
ACATCGAACGAGGCTCCGCGGCGCGGCCCGGGGACGGGTGCATCTCGAATCCTAACGCCGCGCAGGCCCGCGGCGTTACC
GATATCGGTTATCGTGAACC

Downstream 100 bases:

>100_bases
CTGCGCCCCGCGCCGCGGCGCGGCGTCCGGCTTCGATCCGGCCGGTCCGGCGCGGTCCTTAACGGAATGGCCAGCCTTTT
TCCGCACCGTACCGCGAAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MIGNLNIELLRSFLAVVESSSFTAAAQALGLRQSTVSGHIARLEQALGRPLLTRDTHRVAPTPDGQAMIGFAREVVDAQD
RLRAFFSPGGLRGRIRLGVSEDYTLSTLAQVLARFAGRHDAVDLQITVGLSRTLYQGYDAGELDVIFCKRRRGDPRGTLA
WTEDLIWTGRPGFVPDPAKPLPLVLYPPPSMTRTLALDALETVGRSWRVVCTSGSLMGLRAAVEAGLGIAPHSAKVMPPG
LAAIPGAFGLPPLGAVEFVVLGPGRQHAAATALQETILASTGELQGAAH

Sequences:

>Translated_289_residues
MIGNLNIELLRSFLAVVESSSFTAAAQALGLRQSTVSGHIARLEQALGRPLLTRDTHRVAPTPDGQAMIGFAREVVDAQD
RLRAFFSPGGLRGRIRLGVSEDYTLSTLAQVLARFAGRHDAVDLQITVGLSRTLYQGYDAGELDVIFCKRRRGDPRGTLA
WTEDLIWTGRPGFVPDPAKPLPLVLYPPPSMTRTLALDALETVGRSWRVVCTSGSLMGLRAAVEAGLGIAPHSAKVMPPG
LAAIPGAFGLPPLGAVEFVVLGPGRQHAAATALQETILASTGELQGAAH
>Mature_289_residues
MIGNLNIELLRSFLAVVESSSFTAAAQALGLRQSTVSGHIARLEQALGRPLLTRDTHRVAPTPDGQAMIGFAREVVDAQD
RLRAFFSPGGLRGRIRLGVSEDYTLSTLAQVLARFAGRHDAVDLQITVGLSRTLYQGYDAGELDVIFCKRRRGDPRGTLA
WTEDLIWTGRPGFVPDPAKPLPLVLYPPPSMTRTLALDALETVGRSWRVVCTSGSLMGLRAAVEAGLGIAPHSAKVMPPG
LAAIPGAFGLPPLGAVEFVVLGPGRQHAAATALQETILASTGELQGAAH

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=277, Percent_Identity=28.158844765343, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787589, Length=136, Percent_Identity=33.0882352941176, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30641; Mature: 30641

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGNLNIELLRSFLAVVESSSFTAAAQALGLRQSTVSGHIARLEQALGRPLLTRDTHRVA
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PTPDGQAMIGFAREVVDAQDRLRAFFSPGGLRGRIRLGVSEDYTLSTLAQVLARFAGRHD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
AVDLQITVGLSRTLYQGYDAGELDVIFCKRRRGDPRGTLAWTEDLIWTGRPGFVPDPAKP
CEEEEEEECCHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEECCEEECCCCCCCCCCCCC
LPLVLYPPPSMTRTLALDALETVGRSWRVVCTSGSLMGLRAAVEAGLGIAPHSAKVMPPG
CCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC
LAAIPGAFGLPPLGAVEFVVLGPGRQHAAATALQETILASTGELQGAAH
HHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIGNLNIELLRSFLAVVESSSFTAAAQALGLRQSTVSGHIARLEQALGRPLLTRDTHRVA
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PTPDGQAMIGFAREVVDAQDRLRAFFSPGGLRGRIRLGVSEDYTLSTLAQVLARFAGRHD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
AVDLQITVGLSRTLYQGYDAGELDVIFCKRRRGDPRGTLAWTEDLIWTGRPGFVPDPAKP
CEEEEEEECCHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEECCEEECCCCCCCCCCCCC
LPLVLYPPPSMTRTLALDALETVGRSWRVVCTSGSLMGLRAAVEAGLGIAPHSAKVMPPG
CCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC
LAAIPGAFGLPPLGAVEFVVLGPGRQHAAATALQETILASTGELQGAAH
HHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]