| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is dcp [H]
Identifier: 170749341
GI number: 170749341
Start: 3092064
End: 3094133
Strand: Reverse
Name: dcp [H]
Synonym: Mrad2831_2934
Alternate gene names: 170749341
Gene position: 3094133-3092064 (Counterclockwise)
Preceding gene: 170749345
Following gene: 170749340
Centisome position: 50.91
GC content: 71.64
Gene sequence:
>2070_bases ATGTCGGACGCAGCTGATGCCGGGCTCCCGAGCCTGCCGCAGGACAATCCCTTCCGCGAAGCGCAGTGGAGCACCCCGCA CGGCCTGCCGCCGTTCGAGCGGATCCGGCCGGAGCACTACGGACCCGCGTTCGAGGCCGCGCTCGCCGCGCACGATTCCG AGATCCGCGCCATCGCCGGCCAGACCGCGCCGGCCACCTTCGCCAACACCGTCGCGGCGATGGAGCGGGCCGGCCTCGCC CTCGAGCGCGTCGCCGGCGTGTTCTACAATCTGACCGGCAGCCACACCAACCCGGAGTTGCAGGCCATCGAGCGGGAGAT CGGGCCCAAACTCGCCCGGCACGGGAGCGCCATCTACCTCAACCCCGAGCTCTGGGCCCGGATCTCGGCGATCGACGCCG GGGGGCTCGGTGCGGAGGAGCGGCGGGTCCTCGACCGGTACCGGATCCGCTTCCGCCGGTCGGGGGCGGATCTCGGGCTC GAGGACAAGGCCCGCATCGCCGAGATCGCGGCGCGCATGTCGGAGCTCGGGACGACGTTCAGTCAGAACCTCCTGGCCGA CGAGAGCAGCTTCATCCTGCCGCTGCAGGGCGAGGAGGACCTGGCCGGCCTGCCGCCGTTCCTGCGGGCCGCGACCGAGA GCGCCGCGAGGGAGCGCGGCCTCGACGGGCACGTCGTCACCCTGTCCCGCTCGCTGATCGAGCCGTTCCTGGTCTGCTCG ACGCGGCGCGACCTGCGCGAGCGCGCCTACGCGGCCTGGACCAGGCGCGGCGAGAACGGCGGCGCGACCGATAACCGCGC GATCATCGCGGAGATCATCCGGCTGCGCGCCGAGCGCGCGCGGCTCCTCGGCTTCGAGAGCTTCGCGCATTTCGCCCTCG ACGACACGATGGCGGCGAGCCCGGACGCGGCGACCGGGCTGCTGCGGGACGTGTGGACGCCGGCCCGCGCGCGGGCGGCG GAGGAGCGCGATCGCCTCCAGGCCACGATCCAGGCGGAGGGCCACAACTTCGCCCTGCAGGCGCACGATTGGCGGCACTA CGCCGAGAAGGTGCGGCGCGCCGAGCACGACCTCGACGAGAGCGAGATCAAGGCGTACCTGCCCCTCGAGCGGATGATCC AGGCGGCGTTCGACACGGCCGCCCGGCTGTTCGGCCTGACCTTCACGGAACTCTCCGACGTGCCGCGCTACCATCCCGAT GTCCGGGTCTGGCGGGTCGGCAATCCCGACGGGTCCGAGGTCGGCCTGTTCCTGGGGGACTATTTCGCCCGCGCCTCGAA GCGGTCCGGCGCCTGGATGAGCGCCTTCCGCTCGCAGGAGCGCCTCAACGGGCCGATCACGCCGATCATCGTCAACGTCA TGAACTTCGCCAAGGCGCCCGACGGCGAGGCGACGCTGCTGTCGTTCGACGACGCCCGCACCCTGTTCCACGAGTTCGGC CACGCCCTGCACGGGCTGCTCTCGGACGTGACCTACCCGCTCCTGTCCGGGACGGCGGTGTCGCGCGACTTCGTCGAGCT GCCCTCGCAGCTCTACGAGCACTGGCTCGAGCAACCGGAGGTCCTGCGCGCCCACGCGCGCCACCATCGCACGGGCGAGC CCATGCCCGACGCCCTGCTCAGGAAGCTGCTCGCCGCGCGGACCTTCAATCAGGGCTTCGCCACGGTGGAGTACACCGCC TCGGCGATCGTCGACATGACGCTGCACCTCTCGGCGGAGGGCGAGGGCGGTCTCGACGTGCCCGCCTTCGAGGCCGAGGC CCTGCGGCGGATCAGCATGCCGGCCGAGATCAGCATGCGGCACCGCACGCCGCACTTCGCCCACATCTTCTCGGGGGACG GCTACGCCGCCGGATACTACAGCTACCTCTGGTCGGAAGTGCTGGACGCGGACGCCTTCGACGCGTTCCGCGAGGCCGGC GACATCTTCGATCCGGAGACGGCGAAGCGGCTGCGTACCTTCGTGTACGGGGCCGGCAACCTGCGCGATCCGCGCGAGGC CTACACGGCCTTCCGCGGGCGGATGCCGAGCATCGAGCCGCTGCTGAAGAAGCGCGGGCTGGCGGCCTGA
Upstream 100 bases:
>100_bases ATCGGACCACTGTCTTCCAGATCGCGCCGGCACACCCCATGTCGGCGCACCGGCGGCGCAGACGAACGCGCTGTCGCGTG GACGTAGATTTGAGGACTGC
Downstream 100 bases:
>100_bases GCCGTCAGACCGCGGTAAGGGTTTCGTAAACAAACGTCCTTAACGAACGCTTGCAGCGCGAGGCCGCGTGCGGAGTTCGG GGCGATGACGAAGATCGAAG
Product: peptidyl-dipeptidase Dcp
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 689; Mature: 688
Protein sequence:
>689_residues MSDAADAGLPSLPQDNPFREAQWSTPHGLPPFERIRPEHYGPAFEAALAAHDSEIRAIAGQTAPATFANTVAAMERAGLA LERVAGVFYNLTGSHTNPELQAIEREIGPKLARHGSAIYLNPELWARISAIDAGGLGAEERRVLDRYRIRFRRSGADLGL EDKARIAEIAARMSELGTTFSQNLLADESSFILPLQGEEDLAGLPPFLRAATESAARERGLDGHVVTLSRSLIEPFLVCS TRRDLRERAYAAWTRRGENGGATDNRAIIAEIIRLRAERARLLGFESFAHFALDDTMAASPDAATGLLRDVWTPARARAA EERDRLQATIQAEGHNFALQAHDWRHYAEKVRRAEHDLDESEIKAYLPLERMIQAAFDTAARLFGLTFTELSDVPRYHPD VRVWRVGNPDGSEVGLFLGDYFARASKRSGAWMSAFRSQERLNGPITPIIVNVMNFAKAPDGEATLLSFDDARTLFHEFG HALHGLLSDVTYPLLSGTAVSRDFVELPSQLYEHWLEQPEVLRAHARHHRTGEPMPDALLRKLLAARTFNQGFATVEYTA SAIVDMTLHLSAEGEGGLDVPAFEAEALRRISMPAEISMRHRTPHFAHIFSGDGYAAGYYSYLWSEVLDADAFDAFREAG DIFDPETAKRLRTFVYGAGNLRDPREAYTAFRGRMPSIEPLLKKRGLAA
Sequences:
>Translated_689_residues MSDAADAGLPSLPQDNPFREAQWSTPHGLPPFERIRPEHYGPAFEAALAAHDSEIRAIAGQTAPATFANTVAAMERAGLA LERVAGVFYNLTGSHTNPELQAIEREIGPKLARHGSAIYLNPELWARISAIDAGGLGAEERRVLDRYRIRFRRSGADLGL EDKARIAEIAARMSELGTTFSQNLLADESSFILPLQGEEDLAGLPPFLRAATESAARERGLDGHVVTLSRSLIEPFLVCS TRRDLRERAYAAWTRRGENGGATDNRAIIAEIIRLRAERARLLGFESFAHFALDDTMAASPDAATGLLRDVWTPARARAA EERDRLQATIQAEGHNFALQAHDWRHYAEKVRRAEHDLDESEIKAYLPLERMIQAAFDTAARLFGLTFTELSDVPRYHPD VRVWRVGNPDGSEVGLFLGDYFARASKRSGAWMSAFRSQERLNGPITPIIVNVMNFAKAPDGEATLLSFDDARTLFHEFG HALHGLLSDVTYPLLSGTAVSRDFVELPSQLYEHWLEQPEVLRAHARHHRTGEPMPDALLRKLLAARTFNQGFATVEYTA SAIVDMTLHLSAEGEGGLDVPAFEAEALRRISMPAEISMRHRTPHFAHIFSGDGYAAGYYSYLWSEVLDADAFDAFREAG DIFDPETAKRLRTFVYGAGNLRDPREAYTAFRGRMPSIEPLLKKRGLAA >Mature_688_residues SDAADAGLPSLPQDNPFREAQWSTPHGLPPFERIRPEHYGPAFEAALAAHDSEIRAIAGQTAPATFANTVAAMERAGLAL ERVAGVFYNLTGSHTNPELQAIEREIGPKLARHGSAIYLNPELWARISAIDAGGLGAEERRVLDRYRIRFRRSGADLGLE DKARIAEIAARMSELGTTFSQNLLADESSFILPLQGEEDLAGLPPFLRAATESAARERGLDGHVVTLSRSLIEPFLVCST RRDLRERAYAAWTRRGENGGATDNRAIIAEIIRLRAERARLLGFESFAHFALDDTMAASPDAATGLLRDVWTPARARAAE ERDRLQATIQAEGHNFALQAHDWRHYAEKVRRAEHDLDESEIKAYLPLERMIQAAFDTAARLFGLTFTELSDVPRYHPDV RVWRVGNPDGSEVGLFLGDYFARASKRSGAWMSAFRSQERLNGPITPIIVNVMNFAKAPDGEATLLSFDDARTLFHEFGH ALHGLLSDVTYPLLSGTAVSRDFVELPSQLYEHWLEQPEVLRAHARHHRTGEPMPDALLRKLLAARTFNQGFATVEYTAS AIVDMTLHLSAEGEGGLDVPAFEAEALRRISMPAEISMRHRTPHFAHIFSGDGYAAGYYSYLWSEVLDADAFDAFREAGD IFDPETAKRLRTFVYGAGNLRDPREAYTAFRGRMPSIEPLLKKRGLAA
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=614, Percent_Identity=28.9902280130293, Blast_Score=214, Evalue=3e-55, Organism=Homo sapiens, GI14149738, Length=610, Percent_Identity=27.0491803278689, Blast_Score=213, Evalue=4e-55, Organism=Homo sapiens, GI156105687, Length=660, Percent_Identity=22.8787878787879, Blast_Score=123, Evalue=5e-28, Organism=Escherichia coli, GI1787819, Length=680, Percent_Identity=41.0294117647059, Blast_Score=464, Evalue=1e-131, Organism=Escherichia coli, GI1789913, Length=675, Percent_Identity=33.037037037037, Blast_Score=346, Evalue=4e-96, Organism=Caenorhabditis elegans, GI71999758, Length=575, Percent_Identity=22.6086956521739, Blast_Score=89, Evalue=7e-18, Organism=Caenorhabditis elegans, GI32565901, Length=592, Percent_Identity=21.7905405405405, Blast_Score=88, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6319793, Length=585, Percent_Identity=26.1538461538462, Blast_Score=178, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6322715, Length=337, Percent_Identity=26.7062314540059, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI21356111, Length=701, Percent_Identity=24.3937232524964, Blast_Score=178, Evalue=1e-44, Organism=Drosophila melanogaster, GI20129717, Length=409, Percent_Identity=24.6943765281174, Blast_Score=113, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 76421; Mature: 76290
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAADAGLPSLPQDNPFREAQWSTPHGLPPFERIRPEHYGPAFEAALAAHDSEIRAIAG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHC QTAPATFANTVAAMERAGLALERVAGVFYNLTGSHTNPELQAIEREIGPKLARHGSAIYL CCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHCCCEEEE NPELWARISAIDAGGLGAEERRVLDRYRIRFRRSGADLGLEDKARIAEIAARMSELGTTF CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHH SQNLLADESSFILPLQGEEDLAGLPPFLRAATESAARERGLDGHVVTLSRSLIEPFLVCS HHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH TRRDLRERAYAAWTRRGENGGATDNRAIIAEIIRLRAERARLLGFESFAHFALDDTMAAS HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC PDAATGLLRDVWTPARARAAEERDRLQATIQAEGHNFALQAHDWRHYAEKVRRAEHDLDE CCHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCEEEEECHHHHHHHHHHHHHHCCCCH SEIKAYLPLERMIQAAFDTAARLFGLTFTELSDVPRYHPDVRVWRVGNPDGSEVGLFLGD HHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH YFARASKRSGAWMSAFRSQERLNGPITPIIVNVMNFAKAPDGEATLLSFDDARTLFHEFG HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH HALHGLLSDVTYPLLSGTAVSRDFVELPSQLYEHWLEQPEVLRAHARHHRTGEPMPDALL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHH RKLLAARTFNQGFATVEYTASAIVDMTLHLSAEGEGGLDVPAFEAEALRRISMPAEISMR HHHHHHHHHCCCCEEHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHH HRTPHFAHIFSGDGYAAGYYSYLWSEVLDADAFDAFREAGDIFDPETAKRLRTFVYGAGN CCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC LRDPREAYTAFRGRMPSIEPLLKKRGLAA CCCHHHHHHHHHCCCCCHHHHHHHCCCCC >Mature Secondary Structure SDAADAGLPSLPQDNPFREAQWSTPHGLPPFERIRPEHYGPAFEAALAAHDSEIRAIAG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHC QTAPATFANTVAAMERAGLALERVAGVFYNLTGSHTNPELQAIEREIGPKLARHGSAIYL CCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHCCCEEEE NPELWARISAIDAGGLGAEERRVLDRYRIRFRRSGADLGLEDKARIAEIAARMSELGTTF CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHH SQNLLADESSFILPLQGEEDLAGLPPFLRAATESAARERGLDGHVVTLSRSLIEPFLVCS HHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH TRRDLRERAYAAWTRRGENGGATDNRAIIAEIIRLRAERARLLGFESFAHFALDDTMAAS HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC PDAATGLLRDVWTPARARAAEERDRLQATIQAEGHNFALQAHDWRHYAEKVRRAEHDLDE CCHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCEEEEECHHHHHHHHHHHHHHCCCCH SEIKAYLPLERMIQAAFDTAARLFGLTFTELSDVPRYHPDVRVWRVGNPDGSEVGLFLGD HHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH YFARASKRSGAWMSAFRSQERLNGPITPIIVNVMNFAKAPDGEATLLSFDDARTLFHEFG HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH HALHGLLSDVTYPLLSGTAVSRDFVELPSQLYEHWLEQPEVLRAHARHHRTGEPMPDALL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHH RKLLAARTFNQGFATVEYTASAIVDMTLHLSAEGEGGLDVPAFEAEALRRISMPAEISMR HHHHHHHHHCCCCEEHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHH HRTPHFAHIFSGDGYAAGYYSYLWSEVLDADAFDAFREAGDIFDPETAKRLRTFVYGAGN CCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC LRDPREAYTAFRGRMPSIEPLLKKRGLAA CCCHHHHHHHHHCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537804; 11677609 [H]