| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is ilvD2 [H]
Identifier: 170749331
GI number: 170749331
Start: 3082295
End: 3084025
Strand: Reverse
Name: ilvD2 [H]
Synonym: Mrad2831_2924
Alternate gene names: 170749331
Gene position: 3084025-3082295 (Counterclockwise)
Preceding gene: 170749332
Following gene: 170749330
Centisome position: 50.74
GC content: 70.88
Gene sequence:
>1731_bases ATGGTGACGCGTTTGAACGACAAGTCGAAGCTGCCGAGCCGCCACGTCACGGAGGGGCCCGACCGCGCCCCGCACCGCTC CTACCTCTACGCCATGGGCCTGACCCGCGAGCAGATCCACCAGCCGCTGGTGGGTGTCGCCTCGTGCTGGAACGAGGCCG CGCCCTGCAACATCTCGCTGATGCGCCAGGCGCAGGCGGTGAAGAAGGGCGTCGCCGCCGCCAACGGGACGCCGCGCGAG TTCTGCACGATCACCGTCACCGACGGCATCGCCATGGGCCACGGCGGCATGCGCGCGTCGCTGCCGTCGCGGGAGGTTAT CGCCGACTCGGTCGAGCTGACCATGCGCGGCCACGCCTACGACGCCCTCGTGGGTCTGGCGGGCTGCGACAAGTCGCTGC CCGGCATGATGATGGCGATGGTCCGCCTGAACGTGCCCTCGATCTTCATCTACGGCGGCTCGATCCTGCCGGGCTCGTTC CGTGGCAAGCCCGTGACCGTTCAGGACCTGTTCGAGGCGGTCGGCAAGGTGGCCGTCGGCGACATGAGCCTCGAGGATCT CGACGAGCTGGAGCAGGTCGCCTGCCCGTCGGCCGGCGCCTGCGGCGCGCAGTTCACCGCCAACACCATGGCGACCGTCT CCGAGGCGATCGGCCTGGCGCTGCCGTACTCGGCCGGCGCCCCGGCCCCCTACGAGATCCGCGACAAGTTCTGCGCGACC GCCGGCGAGAAGGTGATGGAGCTTCTGGAGAAGCGCATCCGCCCGCGCGACATCGTCACCCGCAAGGCCCTGGAGAACGC CGCCACGGTGGTGGCGGCCTCGGGCGGCTCGACCAACGCGGCGCTGCACCTGCCGGCGATCGCGCACGAGTGCGGCATCG AGTTCACGCTGTTCGACGTGGCCGAGATCTTCCGGCGCACGCCCTACATCGCCGACCTGAAGCCCGGCGGGCGCTATGTC GCCAAGGACATGTTCGAGGTCGGCGGCATCCCGCTGCTGATGAAGACGCTCCTCGACCACGGCTTCATGCACGGCGACTG CATGACGGTCACCGGCCGCACCATCGCGGAGAACATGGACCGGGTGACCTGGAACCCGGACCAGGACGTGGTCTACCCGG CCAACCGCCCGATCACCCCGACCGGCGGCGTCGTCGGCCTCAAGGGCAACCTCGCCCCCGAGGGCGCGATCGTGAAGGTC GCCGGCATCCCGGCCGAGAAGCAGGTCTTCACCGGCCCGGCCCGCGTGTTCGACGGCGAGGAGGCCTGCTTCGCGGCCGT GCAGGCGCGCAGCTACAAGGAAGGCGACGTCCTCGTGATCCGCTACGAGGGTCCGCGGGGCGGCCCCGGCATGCGCGAGA TGCTGTCGACCACCGCGGCCCTCTACGGCCAGGGCATGGGCGACAAGGTCGCGCTGATCACCGACGGGCGCTTCTCGGGC GCGACCCGGGGCTTCTGCGTCGGCCATGTCGGCCCCGAGGCCGCCGTGGGCGGCCCGATCGGGCTGCTCCGCGACGGCGA CGTGATCACCCTCGACGCGATCCAGGGCACGCTCAGCGTCGCCCTGTCCGACGCGGAACTGGCCGAGCGCCGCAAGGCCT GGACCGCGCGGCCCAACACCGCGACCTCCGGCTACCTCTGGAAATACGCGCAGGGCGTCGGCCCGGCCCTGTACGGCGCC GTCACCCATCCGGGAGGTGCCAAGGAGACGCAGAGCTATGCGGACGTCTAG
Upstream 100 bases:
>100_bases TTCCCGAGTACGCGGACGGATTTCCCGGCGCTTCGCGAACGGCGACGCGCCGCGGTTCAACGCACCCTCGGGATCGGCTG CGAAGGCTTGGTCTGAAGTC
Downstream 100 bases:
>100_bases GACTGACCTCAGCCGGCGCCGGGCGCCGGCCGGGGCCGATCCCGGTCGGTTCCGGTGCGTCGGCGGGCTCGCGGTCGCGG CCTGGGCGCTCGCCCTGCTC
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD 2 [H]
Number of amino acids: Translated: 576; Mature: 576
Protein sequence:
>576_residues MVTRLNDKSKLPSRHVTEGPDRAPHRSYLYAMGLTREQIHQPLVGVASCWNEAAPCNISLMRQAQAVKKGVAAANGTPRE FCTITVTDGIAMGHGGMRASLPSREVIADSVELTMRGHAYDALVGLAGCDKSLPGMMMAMVRLNVPSIFIYGGSILPGSF RGKPVTVQDLFEAVGKVAVGDMSLEDLDELEQVACPSAGACGAQFTANTMATVSEAIGLALPYSAGAPAPYEIRDKFCAT AGEKVMELLEKRIRPRDIVTRKALENAATVVAASGGSTNAALHLPAIAHECGIEFTLFDVAEIFRRTPYIADLKPGGRYV AKDMFEVGGIPLLMKTLLDHGFMHGDCMTVTGRTIAENMDRVTWNPDQDVVYPANRPITPTGGVVGLKGNLAPEGAIVKV AGIPAEKQVFTGPARVFDGEEACFAAVQARSYKEGDVLVIRYEGPRGGPGMREMLSTTAALYGQGMGDKVALITDGRFSG ATRGFCVGHVGPEAAVGGPIGLLRDGDVITLDAIQGTLSVALSDAELAERRKAWTARPNTATSGYLWKYAQGVGPALYGA VTHPGGAKETQSYADV
Sequences:
>Translated_576_residues MVTRLNDKSKLPSRHVTEGPDRAPHRSYLYAMGLTREQIHQPLVGVASCWNEAAPCNISLMRQAQAVKKGVAAANGTPRE FCTITVTDGIAMGHGGMRASLPSREVIADSVELTMRGHAYDALVGLAGCDKSLPGMMMAMVRLNVPSIFIYGGSILPGSF RGKPVTVQDLFEAVGKVAVGDMSLEDLDELEQVACPSAGACGAQFTANTMATVSEAIGLALPYSAGAPAPYEIRDKFCAT AGEKVMELLEKRIRPRDIVTRKALENAATVVAASGGSTNAALHLPAIAHECGIEFTLFDVAEIFRRTPYIADLKPGGRYV AKDMFEVGGIPLLMKTLLDHGFMHGDCMTVTGRTIAENMDRVTWNPDQDVVYPANRPITPTGGVVGLKGNLAPEGAIVKV AGIPAEKQVFTGPARVFDGEEACFAAVQARSYKEGDVLVIRYEGPRGGPGMREMLSTTAALYGQGMGDKVALITDGRFSG ATRGFCVGHVGPEAAVGGPIGLLRDGDVITLDAIQGTLSVALSDAELAERRKAWTARPNTATSGYLWKYAQGVGPALYGA VTHPGGAKETQSYADV >Mature_576_residues MVTRLNDKSKLPSRHVTEGPDRAPHRSYLYAMGLTREQIHQPLVGVASCWNEAAPCNISLMRQAQAVKKGVAAANGTPRE FCTITVTDGIAMGHGGMRASLPSREVIADSVELTMRGHAYDALVGLAGCDKSLPGMMMAMVRLNVPSIFIYGGSILPGSF RGKPVTVQDLFEAVGKVAVGDMSLEDLDELEQVACPSAGACGAQFTANTMATVSEAIGLALPYSAGAPAPYEIRDKFCAT AGEKVMELLEKRIRPRDIVTRKALENAATVVAASGGSTNAALHLPAIAHECGIEFTLFDVAEIFRRTPYIADLKPGGRYV AKDMFEVGGIPLLMKTLLDHGFMHGDCMTVTGRTIAENMDRVTWNPDQDVVYPANRPITPTGGVVGLKGNLAPEGAIVKV AGIPAEKQVFTGPARVFDGEEACFAAVQARSYKEGDVLVIRYEGPRGGPGMREMLSTTAALYGQGMGDKVALITDGRFSG ATRGFCVGHVGPEAAVGGPIGLLRDGDVITLDAIQGTLSVALSDAELAERRKAWTARPNTATSGYLWKYAQGVGPALYGA VTHPGGAKETQSYADV
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=577, Percent_Identity=37.9549393414211, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI2367371, Length=485, Percent_Identity=36.4948453608247, Blast_Score=242, Evalue=5e-65, Organism=Escherichia coli, GI1786464, Length=495, Percent_Identity=37.3737373737374, Blast_Score=240, Evalue=2e-64, Organism=Escherichia coli, GI1788157, Length=508, Percent_Identity=28.9370078740157, Blast_Score=200, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6322476, Length=567, Percent_Identity=43.5626102292769, Blast_Score=460, Evalue=1e-130,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 60858; Mature: 60858
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTRLNDKSKLPSRHVTEGPDRAPHRSYLYAMGLTREQIHQPLVGVASCWNEAAPCNISL CCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHH MRQAQAVKKGVAAANGTPREFCTITVTDGIAMGHGGMRASLPSREVIADSVELTMRGHAY HHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCCCCCCCCHHHHHCCEEEEECCCHH DALVGLAGCDKSLPGMMMAMVRLNVPSIFIYGGSILPGSFRGKPVTVQDLFEAVGKVAVG HHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCEECCCCCCCCCEEHHHHHHHHCCEEEC DMSLEDLDELEQVACPSAGACGAQFTANTMATVSEAIGLALPYSAGAPAPYEIRDKFCAT CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHH AGEKVMELLEKRIRPRDIVTRKALENAATVVAASGGSTNAALHLPAIAHECGIEFTLFDV HHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCCCEEECCHHHHHHCCEEEHHHH AEIFRRTPYIADLKPGGRYVAKDMFEVGGIPLLMKTLLDHGFMHGDCMTVTGRTIAENMD HHHHHHCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHCCC RVTWNPDQDVVYPANRPITPTGGVVGLKGNLAPEGAIVKVAGIPAEKQVFTGPARVFDGE CCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEECCCHHEECCH EACFAAVQARSYKEGDVLVIRYEGPRGGPGMREMLSTTAALYGQGMGDKVALITDGRFSG HHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC ATRGFCVGHVGPEAAVGGPIGLLRDGDVITLDAIQGTLSVALSDAELAERRKAWTARPNT CCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEHEEECHHHHHHHHHHCCCCCCC ATSGYLWKYAQGVGPALYGAVTHPGGAKETQSYADV CCCCHHHHHHHCCCHHHHCCCCCCCCCCCCHHHCCC >Mature Secondary Structure MVTRLNDKSKLPSRHVTEGPDRAPHRSYLYAMGLTREQIHQPLVGVASCWNEAAPCNISL CCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHH MRQAQAVKKGVAAANGTPREFCTITVTDGIAMGHGGMRASLPSREVIADSVELTMRGHAY HHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCCCCCCCCHHHHHCCEEEEECCCHH DALVGLAGCDKSLPGMMMAMVRLNVPSIFIYGGSILPGSFRGKPVTVQDLFEAVGKVAVG HHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCEECCCCCCCCCEEHHHHHHHHCCEEEC DMSLEDLDELEQVACPSAGACGAQFTANTMATVSEAIGLALPYSAGAPAPYEIRDKFCAT CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHH AGEKVMELLEKRIRPRDIVTRKALENAATVVAASGGSTNAALHLPAIAHECGIEFTLFDV HHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCCCEEECCHHHHHHCCEEEHHHH AEIFRRTPYIADLKPGGRYVAKDMFEVGGIPLLMKTLLDHGFMHGDCMTVTGRTIAENMD HHHHHHCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHCCC RVTWNPDQDVVYPANRPITPTGGVVGLKGNLAPEGAIVKVAGIPAEKQVFTGPARVFDGE CCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEECCCHHEECCH EACFAAVQARSYKEGDVLVIRYEGPRGGPGMREMLSTTAALYGQGMGDKVALITDGRFSG HHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC ATRGFCVGHVGPEAAVGGPIGLLRDGDVITLDAIQGTLSVALSDAELAERRKAWTARPNT CCCCEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEHEEECHHHHHHHHHHCCCCCCC ATSGYLWKYAQGVGPALYGAVTHPGGAKETQSYADV CCCCHHHHHHHCCCHHHHCCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]