| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is ilvD [H]
Identifier: 170749255
GI number: 170749255
Start: 2997274
End: 2999103
Strand: Reverse
Name: ilvD [H]
Synonym: Mrad2831_2848
Alternate gene names: 170749255
Gene position: 2999103-2997274 (Counterclockwise)
Preceding gene: 170749258
Following gene: 170749251
Centisome position: 49.34
GC content: 70.16
Gene sequence:
>1830_bases ATGCCCGCCTATCGCTCACGCACCACGACCCACGGCCGCAATATGGCCGGCGCCCGCGGCCTCTGGCGCGCCACCGGCAT GAAGGACTCGGACTTCGGCAAGCCGATCATCGCCGTGGTGAACTCCTTCACGCAGTTCGTGCCGGGCCACGTCCACCTCA AGGATCTCGGCCAGCTCGTCGCGCGGGAGATTGAGGCGGCCGGCGGCGTCGCCAAGGAGTTCAACACCATCGCGGTCGAT GACGGCATCGCGATGGGCCACGACGGGATGCTGTACTCGCTGCCGTCCCGCGAATTGATCGCCGATTCCGTCGAGTACAT GGTCAACGCGCACTGCGCCGACGCGATGGTGTGCATCTCGAACTGCGACAAGATCACCCCCGGCATGCTGATGGCGACTT TGCGCCTCAACATCCCGACCGTGTTCGTCTCCGGCGGCCCGATGGAGGCCGGCAAGGTCCAGCTGCCGGGCATCGCCAAG AAGGTCGACCTCGTCGACGCGATGATCGCCGCCGCCGACGACCGGATCTCCGACGAGGATGTCGCCGTCATCGAGCGCTC GGCTTGCCCGACCTGCGGCTCCTGCTCGGGCATGTTCACGGCGAACTCGATGAACTGCCTCACCGAGGCCCTCGGGCTGG CGCTGCCGGGCAACGGCTCGGTGCTCGCCACCCACGCCGACCGCAAGCGCCTCTTCGTCGAGGCCGGCCACCTGATCGTC GATCTGGCCCGCCGCCACTACGAGCAGGACGACGCCGGCGTGCTGCCGCGCGCGGTCGCGAGCTTCCGGGCGTTCGAGAA CGCCATGACCCTCGACATCGCCATGGGCGGGTCGACCAACACGGTGCTGCACCTGCTGGCCGCCGCCCACGAGGGCGAGG TGCCCTTCACCATGGCGGACATCGACCGGCTGTCGCGGCGTGTGCCGGTGCTGTGCAAGGTCGCCCCGGCAGTGGCCAAC GTCCACATGGAGGACGTGCATCGCGCCGGCGGGATCATGGGCATCCTGGGCGAGCTCGACCGGGCCGGCCTGATCGACAC CAGCGTCGGCAACGTCTCTGCCGGGACGCTCGGCGCCGCGCTCGCCCGCTGGGACGTGCGCGGCGAACCGGCCGCCTCGG TGAAGACCTTCTACCAAGCGGCGCCGGGCGGCGTGCCGACCCAGGTGGCGTTCAGTCAGGAATCCCGGTTCGACGCGCTC GATCTCGACCGCGAGGGCGGCGTCATCCGCGACGCGGCACACGCCTATTCGCAGGATGGCGGCCTCGCCGTGCTCTACGG CAACCTCGCCGAGCAGGGCTGTATCGTGAAGACCGCGGGCGTCGACGCCTCGATTCTGACCTTCACGGGCACCGCCCGCG TGTTCGAGAGCCAGGACGCGGCCGTCGACGGCATCCTCAACGGCAAGGTGACGGCGGGCGAGGTCGTGCTGATCCGCTAC GAGGGTCCCCGCGGCGGTCCCGGCATGCAGGAGATGCTCTACCCGACGAGCTACCTGAAATCGAAGGGGCTCGGGAAGGC CTGCGCCCTCGTCACCGACGGGCGGTTCTCCGGCGGGTCGTCGGGCCTCTCCATCGGGCACGTCTCGCCGGAGGCCGCCG AGGGCGGCCTGATCGGCCTCGTGCGCGACGGCGACCGGATCGCCATCGACATCCCGAACCGGCGAATCCAGCTCGAGGTC GACCAGGCAGAACTGGATCAGCGGCGCAGCGCCCAGGAGGCTGCGGGCTGGCAGCCGGCGAAGCCGCGCAAGCGCAAGGT CAGCGCGGCGCTGCGCGCCTACGCTCTGCTCACGACGAGCGCGGCGCACGGCGCGGTTCGCCGGGTCTGA
Upstream 100 bases:
>100_bases CGCCAGAAGCATGCCACGGGTGCCAGCCCCTCCGCGACGCTTGCGGATGCGCGGGCGCGGGCGCAGAAGCCGCTCACCTT TGAACTGGTCGAAGCTCTCG
Downstream 100 bases:
>100_bases TCAGCGGAGTTCGAGAACCAGGGCGGTGATGGCGGCCAGCAGCGCCGCCGCTGCCACCGCGAGGCCGGTGAGGCGCGCGC GAAGGGACCCTGTCGTCTCG
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 609; Mature: 608
Protein sequence:
>609_residues MPAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVD DGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMATLRLNIPTVFVSGGPMEAGKVQLPGIAK KVDLVDAMIAAADDRISDEDVAVIERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHADRKRLFVEAGHLIV DLARRHYEQDDAGVLPRAVASFRAFENAMTLDIAMGGSTNTVLHLLAAAHEGEVPFTMADIDRLSRRVPVLCKVAPAVAN VHMEDVHRAGGIMGILGELDRAGLIDTSVGNVSAGTLGAALARWDVRGEPAASVKTFYQAAPGGVPTQVAFSQESRFDAL DLDREGGVIRDAAHAYSQDGGLAVLYGNLAEQGCIVKTAGVDASILTFTGTARVFESQDAAVDGILNGKVTAGEVVLIRY EGPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGSSGLSIGHVSPEAAEGGLIGLVRDGDRIAIDIPNRRIQLEV DQAELDQRRSAQEAAGWQPAKPRKRKVSAALRAYALLTTSAAHGAVRRV
Sequences:
>Translated_609_residues MPAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVD DGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMATLRLNIPTVFVSGGPMEAGKVQLPGIAK KVDLVDAMIAAADDRISDEDVAVIERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHADRKRLFVEAGHLIV DLARRHYEQDDAGVLPRAVASFRAFENAMTLDIAMGGSTNTVLHLLAAAHEGEVPFTMADIDRLSRRVPVLCKVAPAVAN VHMEDVHRAGGIMGILGELDRAGLIDTSVGNVSAGTLGAALARWDVRGEPAASVKTFYQAAPGGVPTQVAFSQESRFDAL DLDREGGVIRDAAHAYSQDGGLAVLYGNLAEQGCIVKTAGVDASILTFTGTARVFESQDAAVDGILNGKVTAGEVVLIRY EGPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGSSGLSIGHVSPEAAEGGLIGLVRDGDRIAIDIPNRRIQLEV DQAELDQRRSAQEAAGWQPAKPRKRKVSAALRAYALLTTSAAHGAVRRV >Mature_608_residues PAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDD GIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMATLRLNIPTVFVSGGPMEAGKVQLPGIAKK VDLVDAMIAAADDRISDEDVAVIERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHADRKRLFVEAGHLIVD LARRHYEQDDAGVLPRAVASFRAFENAMTLDIAMGGSTNTVLHLLAAAHEGEVPFTMADIDRLSRRVPVLCKVAPAVANV HMEDVHRAGGIMGILGELDRAGLIDTSVGNVSAGTLGAALARWDVRGEPAASVKTFYQAAPGGVPTQVAFSQESRFDALD LDREGGVIRDAAHAYSQDGGLAVLYGNLAEQGCIVKTAGVDASILTFTGTARVFESQDAAVDGILNGKVTAGEVVLIRYE GPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGSSGLSIGHVSPEAAEGGLIGLVRDGDRIAIDIPNRRIQLEVD QAELDQRRSAQEAAGWQPAKPRKRKVSAALRAYALLTTSAAHGAVRRV
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=610, Percent_Identity=74.4262295081967, Blast_Score=922, Evalue=0.0, Organism=Escherichia coli, GI2367371, Length=589, Percent_Identity=29.2020373514431, Blast_Score=181, Evalue=2e-46, Organism=Escherichia coli, GI1788157, Length=548, Percent_Identity=29.3795620437956, Blast_Score=175, Evalue=9e-45, Organism=Escherichia coli, GI1786464, Length=521, Percent_Identity=31.2859884836852, Blast_Score=173, Evalue=3e-44, Organism=Saccharomyces cerevisiae, GI6322476, Length=614, Percent_Identity=37.785016286645, Blast_Score=357, Evalue=4e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 64084; Mature: 63953
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00886 ILVD_EDD_1 ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS HHHHHHCCCHHHHCCEEEECCCEEECCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHH NCDKITPGMLMATLRLNIPTVFVSGGPMEAGKVQLPGIAKKVDLVDAMIAAADDRISDED CCCCCCCCCEEEEEEECCCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCC VAVIERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHADRKRLFVEAGHLIV CEEEECCCCCCCCCCCCCEECCHHHHHHHHHCEEECCCCCEEEEECCCCEEEHHHHHHHH DLARRHYEQDDAGVLPRAVASFRAFENAMTLDIAMGGSTNTVLHLLAAAHEGEVPFTMAD HHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEHHH IDRLSRRVPVLCKVAPAVANVHMEDVHRAGGIMGILGELDRAGLIDTSVGNVSAGTLGAA HHHHHCCCCEEEEECHHHHHCCHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCCHHHHH LARWDVRGEPAASVKTFYQAAPGGVPTQVAFSQESRFDALDLDREGGVIRDAAHAYSQDG HHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEHHHHHHHCCCC GLAVLYGNLAEQGCIVKTAGVDASILTFTGTARVFESQDAAVDGILNGKVTAGEVVLIRY CEEEEECCCCCCCCEEEECCCCEEEEEEECCHHEECCCCCCCCCEECCCEEECEEEEEEE EGPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGSSGLSIGHVSPEAAEGGLIGL CCCCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEE VRDGDRIAIDIPNRRIQLEVDQAELDQRRSAQEAAGWQPAKPRKRKVSAALRAYALLTTS EECCCEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH AAHGAVRRV HHCCHHCCC >Mature Secondary Structure PAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHH AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADAMVCIS HHHHHHCCCHHHHCCEEEECCCEEECCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHH NCDKITPGMLMATLRLNIPTVFVSGGPMEAGKVQLPGIAKKVDLVDAMIAAADDRISDED CCCCCCCCCEEEEEEECCCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCC VAVIERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHADRKRLFVEAGHLIV CEEEECCCCCCCCCCCCCEECCHHHHHHHHHCEEECCCCCEEEEECCCCEEEHHHHHHHH DLARRHYEQDDAGVLPRAVASFRAFENAMTLDIAMGGSTNTVLHLLAAAHEGEVPFTMAD HHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEHHH IDRLSRRVPVLCKVAPAVANVHMEDVHRAGGIMGILGELDRAGLIDTSVGNVSAGTLGAA HHHHHCCCCEEEEECHHHHHCCHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCCHHHHH LARWDVRGEPAASVKTFYQAAPGGVPTQVAFSQESRFDALDLDREGGVIRDAAHAYSQDG HHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEHHHHHHHCCCC GLAVLYGNLAEQGCIVKTAGVDASILTFTGTARVFESQDAAVDGILNGKVTAGEVVLIRY CEEEEECCCCCCCCEEEECCCCEEEEEEECCHHEECCCCCCCCCEECCCEEECEEEEEEE EGPRGGPGMQEMLYPTSYLKSKGLGKACALVTDGRFSGGSSGLSIGHVSPEAAEGGLIGL CCCCCCCCHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEE VRDGDRIAIDIPNRRIQLEVDQAELDQRRSAQEAAGWQPAKPRKRKVSAALRAYALLTTS EECCCEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH AAHGAVRRV HHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA