| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is ppdK [H]
Identifier: 170749215
GI number: 170749215
Start: 2951413
End: 2954103
Strand: Reverse
Name: ppdK [H]
Synonym: Mrad2831_2808
Alternate gene names: 170749215
Gene position: 2954103-2951413 (Counterclockwise)
Preceding gene: 170749216
Following gene: 170749214
Centisome position: 48.6
GC content: 68.64
Gene sequence:
>2691_bases ATGGCGACCGGCAGCGCGAAGTGGGTCTATGCCTTCGGCGACGGCAAGGCGGAGGGCAAGTCGCAGATGCGCGACTTGCT CGGCGGCAAGGGCGCCAATCTGGCCGAGATGTCCAACCTGGGCCTGCCCGTCCCGCCCGGCTTCACCATCACCACCGAGG TCTGCACCTACTTCTACGATCACGGCAAGGCCTACCCGCCGGAGCTGAAGGACCAGGTCTCGGCCGCGCTCGCGCAGGTC GGCGCGCTCACCGGCCGCAAGTTCGGCGACTCGACCAATCCGCTGCTCGTCTCGGTCCGCTCGGGCGCCCGGGCCTCGAT GCCCGGCATGATGGACACGGTGCTCAATCTCGGCCTCAACGACGAGACCGTCCTGGCCCTCGCCAAGGAGGCCGACGACG AGCGCTTCGCCTACGATTCCTATCGCCGCTTCATCACCATGTACTCCAACGTCGTCCTCGGCGTGGAGCACCACGCCTTC GAGGAGGCGCTGGAGCAGTACAAGGAAGGCAAGGGCTTCGACCTCGACACCGAGCTCGGCGCCGGCGACTGGAAGACCCT CATCCAGACCTACAAGAAGATCGTGCGCGACGAGCACGGCTCCGACTTCCCGCAGGGGGCGGACGACCAGCTCTGGGGCG CGATCGGCGCCGTGTTCAATTCCTGGATGATTCCCCGCGCGAAGAAGTACCGGGAGCTGAACAACATCCCGGAGAGCTGG GGCACGGCCGTCAACGTGCAGGCCATGGTGTTCGGCAACATGGGCGACACCTCGGCCACCGGCGTCGCCTTCACCCGCAA TCCCTCCACCGGCGAGAAGGCGCTGTACGGCGAGTTCCTGATCAACGCGCAGGGCGAGGACGTGGTGGCGGGCATCCGCA CGCCGCAGAACATCACCGAGAAGGCGCGGGAAGAGGCCGGAAGCGACAAGCCTTCGATGGAGAAGGCCATGCCCGAGAGC TTCGCGGAGCTGACCCGGATCTACGGGATCCTGGAGTCGCATTACCGTGACATGCAGGACATGGAGTTCACCATCGAGAA GGGGAAGCTCTGGATGCTCCAGACCCGCAACGGCAAGCGCACGGCCAAGGCCGCCCTGCGCATCGCCGTCGATCTGGCGG GCGAGGGGCTGATCTCCCGCGAGGAGGCGATCGGCCGCGTCGAGCCCGGCGCCCTCGATCAGCTCCTGCACCCGACGATC GACCCGAAGGCCGAGCGCAAGGTCATCGCCTCCGGCCTGCCGGCCTCGCCCGGCGCGGCGACCGGCGAGATCGTGTTCAA CTCCGAGGACGCGGAGGCGCACCGCAAGGCCGAGCGCAAGTGCATCCTGGTGCGGATCGAGACCTCGCCCGAGGACATCC ACGGCATGCACGCCGCCGAGGGCATCCTCACCACCCGCGGCGGCATGACCAGCCACGCGGCCGTCGTCGCGCGCGGCATG GGCAAGCCCTGCGTCTCCGGCGTCGGCTCGATCCGGATCGACTACAAGGCGCAGACCCTCACGGTCGGAGGCACGACGCT GAAGGCCGGCGACAAGATCACCATCGACGGCTCCACCGGTCAGGTGATCCAGGGTGAGGTGAAGATGCTGGAGCCCGAGC TCTCCGGCGATTTCGCCACGCTGATGGAGTGGGCGGACGCGTTCCGGGCCATGAAGGTCCGGGCGAACGCCGACACCCCG ACCGATGCGCGCACCGCCCGCAACTTCGGCGCCGAGGGCATCGGCCTCTGCCGCACGGAGCACATGTTCTTCGAGGGCGA CCGCATCATCGCGGTGCGCGAGATGATCCTGGCGGACGACGCCGAGGGCCGCCGCGCGGCGCTGGCGAAGATCCTGCCCT ACCAGCGCCAGGACTTCCTGGAGCTGTTCACGATCATGTCCGGCCTGCCGGTCACGATCCGCCTGCTCGACCCGCCGCTC CACGAGTTCCTGCCGCACACCGACGCCGAGGTCGCCGAAGTCGTGAAGGCGACGGGCGTCTCCGAGGAGAAGATCCGGCA TCGGATGCGCGAGCTCTCCGAGCATAACCCGATGCTCGGCTTCCGCGGCTGCCGCCTGGCGATCGCCTTCCCGGAGATCG CCGAGATGCAGGCCCGGGCCATCTTCGAGGCCGCCGTCCAGGCTGCCGCGGACACCGGCAAGGCAGTGACGCCCGAAGTC ATGGTGCCGCTGGTCTTCACCCGCGCCGAGTTCGACATCGTGAAGGCCCGCATCGACGCCATGGCGAGGGCCGTGTCCGA GGAAAAGGGCGCGACCCTCGACTACCAAGTCGGCACGATGATCGAGCTGCCGCGCGCCGCCCTCAAGGCCGGCGAGATCG CCGAGACCGCGGAGTTCTTCTCCTTCGGCACCAACGACCTGACGCAGACGGCGCTCGGCATCTCCCGCGACGACGCCGCC ACCTTCCTGGGGCCCTACACCCAGAAGGGCATCCTGCCGGCCGATCCGTTCATCACGATCGATCAGGAGGGCGTGGGCGA GCTGGTGCGCATCGGCGTGGAGCGCGGCCGCAAGACGCGTCCGGACATCAAGCTCGGCATCTGCGGCGAGCACGGCGGCG ACCCCGCCTCGGTGGGCTTCTGCCAGGAGGTCGGGCTCGATTACGTGTCCTGCTCGCCCTACCGGGTGCCGATCGCCCGG CTCGCGGCCGCCCAGGCAGCGCTGGGCAAGGTCGCCGGCAAGGAAGGCTGA
Upstream 100 bases:
>100_bases ACAGGGCCATCGCGCGTTCATCTTGCGTTGCGTTGCGGGATGGTCCAACCCCGCCCATCAGCTCGGCCGGCGCCGGGCAC TAGATACGGACGGGATCGAC
Downstream 100 bases:
>100_bases GGCCGGTCCGGGGGGCGCCGAGCGCGTCCCCCTTTCGGCTATCAACCGTCCGGACGAGGATCAGTGGAAAACTCGCCTTT CGGTCGAACTCGCCTCCTCG
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 896; Mature: 895
Protein sequence:
>896_residues MATGSAKWVYAFGDGKAEGKSQMRDLLGGKGANLAEMSNLGLPVPPGFTITTEVCTYFYDHGKAYPPELKDQVSAALAQV GALTGRKFGDSTNPLLVSVRSGARASMPGMMDTVLNLGLNDETVLALAKEADDERFAYDSYRRFITMYSNVVLGVEHHAF EEALEQYKEGKGFDLDTELGAGDWKTLIQTYKKIVRDEHGSDFPQGADDQLWGAIGAVFNSWMIPRAKKYRELNNIPESW GTAVNVQAMVFGNMGDTSATGVAFTRNPSTGEKALYGEFLINAQGEDVVAGIRTPQNITEKAREEAGSDKPSMEKAMPES FAELTRIYGILESHYRDMQDMEFTIEKGKLWMLQTRNGKRTAKAALRIAVDLAGEGLISREEAIGRVEPGALDQLLHPTI DPKAERKVIASGLPASPGAATGEIVFNSEDAEAHRKAERKCILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGM GKPCVSGVGSIRIDYKAQTLTVGGTTLKAGDKITIDGSTGQVIQGEVKMLEPELSGDFATLMEWADAFRAMKVRANADTP TDARTARNFGAEGIGLCRTEHMFFEGDRIIAVREMILADDAEGRRAALAKILPYQRQDFLELFTIMSGLPVTIRLLDPPL HEFLPHTDAEVAEVVKATGVSEEKIRHRMRELSEHNPMLGFRGCRLAIAFPEIAEMQARAIFEAAVQAAADTGKAVTPEV MVPLVFTRAEFDIVKARIDAMARAVSEEKGATLDYQVGTMIELPRAALKAGEIAETAEFFSFGTNDLTQTALGISRDDAA TFLGPYTQKGILPADPFITIDQEGVGELVRIGVERGRKTRPDIKLGICGEHGGDPASVGFCQEVGLDYVSCSPYRVPIAR LAAAQAALGKVAGKEG
Sequences:
>Translated_896_residues MATGSAKWVYAFGDGKAEGKSQMRDLLGGKGANLAEMSNLGLPVPPGFTITTEVCTYFYDHGKAYPPELKDQVSAALAQV GALTGRKFGDSTNPLLVSVRSGARASMPGMMDTVLNLGLNDETVLALAKEADDERFAYDSYRRFITMYSNVVLGVEHHAF EEALEQYKEGKGFDLDTELGAGDWKTLIQTYKKIVRDEHGSDFPQGADDQLWGAIGAVFNSWMIPRAKKYRELNNIPESW GTAVNVQAMVFGNMGDTSATGVAFTRNPSTGEKALYGEFLINAQGEDVVAGIRTPQNITEKAREEAGSDKPSMEKAMPES FAELTRIYGILESHYRDMQDMEFTIEKGKLWMLQTRNGKRTAKAALRIAVDLAGEGLISREEAIGRVEPGALDQLLHPTI DPKAERKVIASGLPASPGAATGEIVFNSEDAEAHRKAERKCILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGM GKPCVSGVGSIRIDYKAQTLTVGGTTLKAGDKITIDGSTGQVIQGEVKMLEPELSGDFATLMEWADAFRAMKVRANADTP TDARTARNFGAEGIGLCRTEHMFFEGDRIIAVREMILADDAEGRRAALAKILPYQRQDFLELFTIMSGLPVTIRLLDPPL HEFLPHTDAEVAEVVKATGVSEEKIRHRMRELSEHNPMLGFRGCRLAIAFPEIAEMQARAIFEAAVQAAADTGKAVTPEV MVPLVFTRAEFDIVKARIDAMARAVSEEKGATLDYQVGTMIELPRAALKAGEIAETAEFFSFGTNDLTQTALGISRDDAA TFLGPYTQKGILPADPFITIDQEGVGELVRIGVERGRKTRPDIKLGICGEHGGDPASVGFCQEVGLDYVSCSPYRVPIAR LAAAQAALGKVAGKEG >Mature_895_residues ATGSAKWVYAFGDGKAEGKSQMRDLLGGKGANLAEMSNLGLPVPPGFTITTEVCTYFYDHGKAYPPELKDQVSAALAQVG ALTGRKFGDSTNPLLVSVRSGARASMPGMMDTVLNLGLNDETVLALAKEADDERFAYDSYRRFITMYSNVVLGVEHHAFE EALEQYKEGKGFDLDTELGAGDWKTLIQTYKKIVRDEHGSDFPQGADDQLWGAIGAVFNSWMIPRAKKYRELNNIPESWG TAVNVQAMVFGNMGDTSATGVAFTRNPSTGEKALYGEFLINAQGEDVVAGIRTPQNITEKAREEAGSDKPSMEKAMPESF AELTRIYGILESHYRDMQDMEFTIEKGKLWMLQTRNGKRTAKAALRIAVDLAGEGLISREEAIGRVEPGALDQLLHPTID PKAERKVIASGLPASPGAATGEIVFNSEDAEAHRKAERKCILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMG KPCVSGVGSIRIDYKAQTLTVGGTTLKAGDKITIDGSTGQVIQGEVKMLEPELSGDFATLMEWADAFRAMKVRANADTPT DARTARNFGAEGIGLCRTEHMFFEGDRIIAVREMILADDAEGRRAALAKILPYQRQDFLELFTIMSGLPVTIRLLDPPLH EFLPHTDAEVAEVVKATGVSEEKIRHRMRELSEHNPMLGFRGCRLAIAFPEIAEMQARAIFEAAVQAAADTGKAVTPEVM VPLVFTRAEFDIVKARIDAMARAVSEEKGATLDYQVGTMIELPRAALKAGEIAETAEFFSFGTNDLTQTALGISRDDAAT FLGPYTQKGILPADPFITIDQEGVGELVRIGVERGRKTRPDIKLGICGEHGGDPASVGFCQEVGLDYVSCSPYRVPIARL AAAQAALGKVAGKEG
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=459, Percent_Identity=24.6187363834423, Blast_Score=107, Evalue=4e-24, Organism=Escherichia coli, GI1787994, Length=716, Percent_Identity=24.3016759776536, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1789193, Length=416, Percent_Identity=25.9615384615385, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1788726, Length=470, Percent_Identity=23.6170212765957, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 96954; Mature: 96823
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGSAKWVYAFGDGKAEGKSQMRDLLGGKGANLAEMSNLGLPVPPGFTITTEVCTYFYD CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEHHHHHHHHHH HGKAYPPELKDQVSAALAQVGALTGRKFGDSTNPLLVSVRSGARASMPGMMDTVLNLGLN CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCC DETVLALAKEADDERFAYDSYRRFITMYSNVVLGVEHHAFEEALEQYKEGKGFDLDTELG CHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHCCCCCCCCCCCC AGDWKTLIQTYKKIVRDEHGSDFPQGADDQLWGAIGAVFNSWMIPRAKKYRELNNIPESW CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH GTAVNVQAMVFGNMGDTSATGVAFTRNPSTGEKALYGEFLINAQGEDVVAGIRTPQNITE CCEEEEEEEEEECCCCCCCCCEEEECCCCCCCHHEEEEEEECCCCCCEEEECCCCHHHHH KAREEAGSDKPSMEKAMPESFAELTRIYGILESHYRDMQDMEFTIEKGKLWMLQTRNGKR HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCEEEEEECCCCH TAKAALRIAVDLAGEGLISREEAIGRVEPGALDQLLHPTIDPKAERKVIASGLPASPGAA HHHHHHHEEEEECCCCCCCHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC TGEIVFNSEDAEAHRKAERKCILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGM CCEEEECCCCHHHHHHHCCCEEEEEEECCCHHHCCHHHHCCEEEECCCCCHHHHHHHHCC GKPCVSGVGSIRIDYKAQTLTVGGTTLKAGDKITIDGSTGQVIQGEVKMLEPELSGDFAT CCHHHCCCCCEEEEEEEEEEEECCEEEECCCEEEEECCCCCEEECCHHEECCCCCCCHHH LMEWADAFRAMKVRANADTPTDARTARNFGAEGIGLCRTEHMFFEGDRIIAVREMILADD HHHHHHHHHHEEEECCCCCCCHHHHHHHCCCCCCEEEEECCEEECCCEEEEHHHHHHHCC AEGRRAALAKILPYQRQDFLELFTIMSGLPVTIRLLDPPLHEFLPHTDAEVAEVVKATGV CCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHHHHHHHHHCCC SEEKIRHRMRELSEHNPMLGFRGCRLAIAFPEIAEMQARAIFEAAVQAAADTGKAVTPEV CHHHHHHHHHHHHHCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH MVPLVFTRAEFDIVKARIDAMARAVSEEKGATLDYQVGTMIELPRAALKAGEIAETAEFF HHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCHHHHHHCCHHHHHHHH SFGTNDLTQTALGISRDDAATFLGPYTQKGILPADPFITIDQEGVGELVRIGVERGRKTR HCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCC PDIKLGICGEHGGDPASVGFCQEVGLDYVSCSPYRVPIARLAAAQAALGKVAGKEG CCEEEEECCCCCCCCCCCHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ATGSAKWVYAFGDGKAEGKSQMRDLLGGKGANLAEMSNLGLPVPPGFTITTEVCTYFYD CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEHHHHHHHHHH HGKAYPPELKDQVSAALAQVGALTGRKFGDSTNPLLVSVRSGARASMPGMMDTVLNLGLN CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCC DETVLALAKEADDERFAYDSYRRFITMYSNVVLGVEHHAFEEALEQYKEGKGFDLDTELG CHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHCCCCCCCCCCCC AGDWKTLIQTYKKIVRDEHGSDFPQGADDQLWGAIGAVFNSWMIPRAKKYRELNNIPESW CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH GTAVNVQAMVFGNMGDTSATGVAFTRNPSTGEKALYGEFLINAQGEDVVAGIRTPQNITE CCEEEEEEEEEECCCCCCCCCEEEECCCCCCCHHEEEEEEECCCCCCEEEECCCCHHHHH KAREEAGSDKPSMEKAMPESFAELTRIYGILESHYRDMQDMEFTIEKGKLWMLQTRNGKR HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCEEEEEECCCCH TAKAALRIAVDLAGEGLISREEAIGRVEPGALDQLLHPTIDPKAERKVIASGLPASPGAA HHHHHHHEEEEECCCCCCCHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC TGEIVFNSEDAEAHRKAERKCILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGM CCEEEECCCCHHHHHHHCCCEEEEEEECCCHHHCCHHHHCCEEEECCCCCHHHHHHHHCC GKPCVSGVGSIRIDYKAQTLTVGGTTLKAGDKITIDGSTGQVIQGEVKMLEPELSGDFAT CCHHHCCCCCEEEEEEEEEEEECCEEEECCCEEEEECCCCCEEECCHHEECCCCCCCHHH LMEWADAFRAMKVRANADTPTDARTARNFGAEGIGLCRTEHMFFEGDRIIAVREMILADD HHHHHHHHHHEEEECCCCCCCHHHHHHHCCCCCCEEEEECCEEECCCEEEEHHHHHHHCC AEGRRAALAKILPYQRQDFLELFTIMSGLPVTIRLLDPPLHEFLPHTDAEVAEVVKATGV CCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHHHHHHHHHCCC SEEKIRHRMRELSEHNPMLGFRGCRLAIAFPEIAEMQARAIFEAAVQAAADTGKAVTPEV CHHHHHHHHHHHHHCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH MVPLVFTRAEFDIVKARIDAMARAVSEEKGATLDYQVGTMIELPRAALKAGEIAETAEFF HHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCHHHHHHCCHHHHHHHH SFGTNDLTQTALGISRDDAATFLGPYTQKGILPADPFITIDQEGVGELVRIGVERGRKTR HCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCC PDIKLGICGEHGGDPASVGFCQEVGLDYVSCSPYRVPIARLAAAQAALGKVAGKEG CCEEEEECCCCCCCCCCCHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]