| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
Click here to switch to the map view.
The map label for this gene is yhdF [H]
Identifier: 170748878
GI number: 170748878
Start: 2622095
End: 2622955
Strand: Reverse
Name: yhdF [H]
Synonym: Mrad2831_2460
Alternate gene names: 170748878
Gene position: 2622955-2622095 (Counterclockwise)
Preceding gene: 170748883
Following gene: 170748877
Centisome position: 43.16
GC content: 70.38
Gene sequence:
>861_bases ATGACCGACTTCCCGAAGCCGCCCTTCGACCGGCAGCGCCAGCTCACCCCGCCGGCCCGCGACGCCGACATGGATCCGCG ACCGGATTACGGCGAGTCGCACTATCGCGGCTCGGGGCGGCTGTCCGGCCGCAAGGCGATCATCACCGGCGCGGACAGCG GCATCGGCCGGGCGGTGGCGCTCGCCTTCGCCCGCGAGGGGGCGGACGTGCTGGTCAGCTACTACGACGAGCACGACGAC GCCCGGGAGACCTGCCGCCTCGTGGAATCGGCGGGCCGCACGGCCGTGGCGGTGCCGGGGGACATCAAGGACCCGAAGCA TTGCCGCGCCATCGTCGACAAGGCGGTGGCCGCGTTCGGGCAGGTCGACGTGCTCGTCAACAACGCCGCGCACCAGAAGA CCTTCGCGAACCCGGAGGAGATCTCCGACGAGGAGTGGGAGGTCACCTTCGCGACCAACATCCACGCCATGTTCTACCTG GTGAAGGCCGCTCTCCCGCACATGAGGAGCGGCAGCTCGATCATCAACACCACCTCGGTGAACGCCGACGCGCCCAGCCC GCAACTGCTCGCCTACGCCACCACCAAGGGCGCGATCCAGAACTTCACCGGCGGCCTCGCCCAGATGCTGGCGGAGCGCG ACATCCGGGTGAACTGCGTGGCCCCGGGGCCGGTCTGGACGCCGCTCATCCCCTCCACCATGCCGGAGGAGAAGGTCCGC TCCTTCGGGTCGCAGGTGCCGATGAAGCGCCCCGGCCAGCCCTGCGAGCTCGCCCCCGTCTACGTCATGCTGGCCGGACC GGAGTCGAGCTACGTCTCCGGCGCCACCGTGGCGGTGACCGGCGGCAAGCCGATCCTCTGA
Upstream 100 bases:
>100_bases TCCGCGGTCGATCCGGGCGCCGAGGCGCAGCTCCCGTTCGACGCCCCGCCTGGGGATCCCCGCAGCGCGACCACCTCAGC CGCCGCCCAAGGAGCGCCAC
Downstream 100 bases:
>100_bases CCCATCCCGTCACAGCTCAGGAGAACCGCCATGGCCCGCAACCCGACCGATGCGAACCCGTCCGACCGCGCGAGCCTGCG CAGCTTCAGCGCGACGGCCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MTDFPKPPFDRQRQLTPPARDADMDPRPDYGESHYRGSGRLSGRKAIITGADSGIGRAVALAFAREGADVLVSYYDEHDD ARETCRLVESAGRTAVAVPGDIKDPKHCRAIVDKAVAAFGQVDVLVNNAAHQKTFANPEEISDEEWEVTFATNIHAMFYL VKAALPHMRSGSSIINTTSVNADAPSPQLLAYATTKGAIQNFTGGLAQMLAERDIRVNCVAPGPVWTPLIPSTMPEEKVR SFGSQVPMKRPGQPCELAPVYVMLAGPESSYVSGATVAVTGGKPIL
Sequences:
>Translated_286_residues MTDFPKPPFDRQRQLTPPARDADMDPRPDYGESHYRGSGRLSGRKAIITGADSGIGRAVALAFAREGADVLVSYYDEHDD ARETCRLVESAGRTAVAVPGDIKDPKHCRAIVDKAVAAFGQVDVLVNNAAHQKTFANPEEISDEEWEVTFATNIHAMFYL VKAALPHMRSGSSIINTTSVNADAPSPQLLAYATTKGAIQNFTGGLAQMLAERDIRVNCVAPGPVWTPLIPSTMPEEKVR SFGSQVPMKRPGQPCELAPVYVMLAGPESSYVSGATVAVTGGKPIL >Mature_285_residues TDFPKPPFDRQRQLTPPARDADMDPRPDYGESHYRGSGRLSGRKAIITGADSGIGRAVALAFAREGADVLVSYYDEHDDA RETCRLVESAGRTAVAVPGDIKDPKHCRAIVDKAVAAFGQVDVLVNNAAHQKTFANPEEISDEEWEVTFATNIHAMFYLV KAALPHMRSGSSIINTTSVNADAPSPQLLAYATTKGAIQNFTGGLAQMLAERDIRVNCVAPGPVWTPLIPSTMPEEKVRS FGSQVPMKRPGQPCELAPVYVMLAGPESSYVSGATVAVTGGKPIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=32.3886639676113, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=32.15859030837, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.8943089430894, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=29.3040293040293, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.4347826086957, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=29.2, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI66933014, Length=260, Percent_Identity=33.0769230769231, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=32.4607329842932, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI10190704, Length=275, Percent_Identity=28.3636363636364, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4504505, Length=252, Percent_Identity=27.7777777777778, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=29.5774647887324, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=29.6875, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=27.8225806451613, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI7706318, Length=205, Percent_Identity=26.3414634146341, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=37.037037037037, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=28.3400809716599, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI210032110, Length=215, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=214, Percent_Identity=29.4392523364486, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1789378, Length=284, Percent_Identity=48.2394366197183, Blast_Score=265, Evalue=2e-72, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=35.0597609561753, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=34.3629343629344, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=33.0612244897959, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=32.7800829875519, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=34.4262295081967, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.9672131147541, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.0813008130081, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=31.3008130081301, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=26.953125, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786701, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=26.6304347826087, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=29.3172690763052, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=30.4511278195489, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=32.9588014981273, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=32.1285140562249, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=31.3207547169811, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=33.8582677165354, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=32.3308270676692, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=30.8880308880309, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=31.0077519379845, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=30.2238805970149, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=31.6981132075472, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.5454545454545, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.811320754717, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=27.8195488721804, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=31.4814814814815, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=30.4832713754647, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=26.978417266187, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=29.5454545454545, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=25.5639097744361, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.9433962264151, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=26.8482490272374, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.906976744186, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=28.4644194756554, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=32.6424870466321, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=27.0676691729323, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193203117, Length=246, Percent_Identity=26.4227642276423, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71982365, Length=229, Percent_Identity=26.6375545851528, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=29.1828793774319, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17568967, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=26.3779527559055, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203115, Length=243, Percent_Identity=26.3374485596708, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=25.2032520325203, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=25.3012048192771, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17558628, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=211, Percent_Identity=27.9620853080569, Blast_Score=73, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=201, Percent_Identity=27.8606965174129, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=258, Percent_Identity=26.7441860465116, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=31.3253012048193, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=31.0756972111554, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.4820717131474, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=31.5573770491803, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.4661354581673, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=30.4526748971193, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=29.4354838709677, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=27.5510204081633, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI21358495, Length=204, Percent_Identity=29.9019607843137, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24584748, Length=211, Percent_Identity=28.9099526066351, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI161076933, Length=211, Percent_Identity=28.9099526066351, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI17737361, Length=251, Percent_Identity=27.4900398406374, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=31.6205533596838, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355631, Length=177, Percent_Identity=28.8135593220339, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30693; Mature: 30562
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFPKPPFDRQRQLTPPARDADMDPRPDYGESHYRGSGRLSGRKAIITGADSGIGRAVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH LAFAREGADVLVSYYDEHDDARETCRLVESAGRTAVAVPGDIKDPKHCRAIVDKAVAAFG HHHHHCCCCEEEEEHHCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHC QVDVLVNNAAHQKTFANPEEISDEEWEVTFATNIHAMFYLVKAALPHMRSGSSIINTTSV CEEEEECCCHHHHHCCCHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEC NADAPSPQLLAYATTKGAIQNFTGGLAQMLAERDIRVNCVAPGPVWTPLIPSTMPEEKVR CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHH SFGSQVPMKRPGQPCELAPVYVMLAGPESSYVSGATVAVTGGKPIL HHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCC >Mature Secondary Structure TDFPKPPFDRQRQLTPPARDADMDPRPDYGESHYRGSGRLSGRKAIITGADSGIGRAVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH LAFAREGADVLVSYYDEHDDARETCRLVESAGRTAVAVPGDIKDPKHCRAIVDKAVAAFG HHHHHCCCCEEEEEHHCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHC QVDVLVNNAAHQKTFANPEEISDEEWEVTFATNIHAMFYLVKAALPHMRSGSSIINTTSV CEEEEECCCHHHHHCCCHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEC NADAPSPQLLAYATTKGAIQNFTGGLAQMLAERDIRVNCVAPGPVWTPLIPSTMPEEKVR CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHH SFGSQVPMKRPGQPCELAPVYVMLAGPESSYVSGATVAVTGGKPIL HHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]