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The map label for this gene is ihfB [H]

Identifier: 170748862

GI number: 170748862

Start: 2609737

End: 2610048

Strand: Reverse

Name: ihfB [H]

Synonym: Mrad2831_2444

Alternate gene names: 170748862

Gene position: 2610048-2609737 (Counterclockwise)

Preceding gene: 170748863

Following gene: 170748861

Centisome position: 42.94

GC content: 68.91

Gene sequence:

>312_bases
ATGATCAAGTCGGAGCTCGTCCTCAAGATCGCCGAGCAGAACCCGCATCTCTACCAGCGCGACGTGGAGATCCTGGTCAA
CGCGATCCTCGACACCATTTCCGACGCGCTGGCCCGCGGCGACCGGGTCGAGCTGCGCGGCTTCGGCGCCTTCTCGGTCA
AGCGCCGCGAGGCGCGCCGGGGACGCAACCCGCGCACGGGTGCCGCCGTTGCCGTGTCCGAGAAGGCGATCCCCGTGTTC
AAGACCGGCAAGGAGATGCGCCAGCGCCTCAACGCCGCCGGGATCGGCGAGAATGCCTCGGCCGCCGAGTAG

Upstream 100 bases:

>100_bases
CCGAGGCCGCCCGGGGCGGGATGCTCGCCCTCTGGCGCCCGGAACCCTGAACGACCGCCGCCGCGCAGCCCGCCCCGATC
CCGCGAGAAGATCCCACGCC

Downstream 100 bases:

>100_bases
GAAGGACCTGTGAGCGCGATGATCCGTTTCCTGAAGAGCCTCGTGCTGCTGCCGATCGCCGCCCTGGTGATCCTCCTGGC
GGTGGCCAACCGCGCGCCGG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARRGRNPRTGAAVAVSEKAIPVF
KTGKEMRQRLNAAGIGENASAAE

Sequences:

>Translated_103_residues
MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARRGRNPRTGAAVAVSEKAIPVF
KTGKEMRQRLNAAGIGENASAAE
>Mature_103_residues
MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARRGRNPRTGAAVAVSEKAIPVF
KTGKEMRQRLNAAGIGENASAAE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=94, Percent_Identity=45.7446808510638, Blast_Score=92, Evalue=8e-21,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=37.3626373626374, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1790433, Length=87, Percent_Identity=35.632183908046, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1788005, Length=104, Percent_Identity=30.7692307692308, Blast_Score=58, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11286; Mature: 11286

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHC
GRNPRTGAAVAVSEKAIPVFKTGKEMRQRLNAAGIGENASAAE
CCCCCCCCEEEECCCCCCHHCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHC
GRNPRTGAAVAVSEKAIPVFKTGKEMRQRLNAAGIGENASAAE
CCCCCCCCEEEECCCCCCHHCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA