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The map label for this gene is yciR [C]

Identifier: 170748165

GI number: 170748165

Start: 1857267

End: 1859645

Strand: Reverse

Name: yciR [C]

Synonym: Mrad2831_1747

Alternate gene names: 170748165

Gene position: 1859645-1857267 (Counterclockwise)

Preceding gene: 170748167

Following gene: 170748159

Centisome position: 30.6

GC content: 73.81

Gene sequence:

>2379_bases
ATGCTCGCAGTCGTCGGTTGTTTCGTCGGGGAACACAACCTGTGGCTGGTGGCCCTCGCGGCCCTGGTCTGCACGCTGGC
GAGCGCCACCGCGATCGAGCTGCTCATCCATGCCGGCGGGGCCGGCGGATTCAGCCGCTACGTCTGGCTCGCGGTGGCCG
CCGCCGCCGGCGGATCGGGGATCTGGGCGACGCATTTCCTGGCGATGCTCGCCTTCGAGCCGGGGCTGCCCTCGGGCTAC
GGCGTCGGGCTGACGCTCCTCTCCTACGTGGACGCCGTCGCGATCACGGGGCTCGGCTTCGCCCTGGCCGCGTCCGGCCG
GGCGATCCAGGCGGGTCTCGGCGGCGCCGTGGTCGGCGGCGGCATCGCGACGATGCACTACACCGGCATGGCCGCCTATC
AGGTGGCGGGACACCTCGTCTGGAATCCCGCGCTGGTCGTCGTCTCGGTCGCCCTCGGCGCGGGTCTGGGCGCCGCCGCC
CTGGTGGTCGGCCTGTCGGCCACCACGGTCCGGGGTCGGTACGGCGGCGTCGCGCTGCTGATCCTGGCGATCTGCGCCCA
CCACTTCACCGGCATGGGCGCGGTGACCCTCCATCCCGACCCCACCGTGGCGATCCCCACCGGCGCGATCCGGACCGGGT
GGCTCGCCGCGGCCGTGGCGGTGGCGAGCTGCTTCATCCTGCTGCTCGCCGGCGCCGCCCTGATGGTCGACCTGCGGGAG
CGCCGCCGCGCCGATCTCGAGCGCGAGCGCCTGCGCAGCCTCGCCAACGCGGCCGTGGAGGGCCTCGTCGTCTGCCGCGG
CGGCGAGATCGTCAGCGCCAACGAGGCCTTCGCCCGGCTCGCGGGCCTGGAGGCGGCCCTCCTGACGGGCCGGAGCCTGA
CAGCCTACCTGCCAGACCTCGTGTCCGGGACCGGGACGGCCGACCAGCCCCTGGAAACCGAGCTCGTCCCGGCAGGGGGC
GCCCCCATCCCGGTCGAGGTGATCATGCGCCCGGTCGCCGAGTACGGGCGGCTGCCGCACCACGCCGTGGCGGTGCGCGA
CCTGCGCGCCCGGCGCCGGGCCGAGAGCGAGATCCACTATCTCGCCCACCACGACGCGCTCACCGGCCTCGCCAACCGCA
CGAGCTTCCACGCGCGGCTCGAGCGCGAGATGCGCACCGCCGACGCCCTGGGCGGCCGGTTCGCGGTGCTGTGCCTCGAC
CTCGACCGTTTCAAGGAGGTCAACGACCTGTTCGGCCACGCGGCCGGCGACGCGATGCTGCGCGACCTCGCGCTCCGGGT
CGGCGGCCTGCTCGATCCCCGGCAGCTGATGGCGCGCCTCGGCGGCGATGAGTTCGCGATCCTGACGCCGCAGGCGGACG
GATCCGCCGAGCGGCTGGCCGAGCGGATCCTCGCCACCCTGGCGGCGGTGCCGGCCGCCTCCGGCCCGGTGATCGCCACC
AGCATCGGCATCGCGGTCTATCCCGACGACGCCGCGGACCAGCGCGCGCTCCTGAGCCACGCCGACGCCGCCCTCTACCG
GGCCAAGAACGAGGGGCGCGGCACCTGCCGGCGCTACGACGCCAGCATGGGCGCGCAGATCCGCGACCGGCGCCAGCTCG
AGCACGACCTCCGCCACGCTGTGGCGAAGGGCGAGCTGGAACTCGTCTACCAGCCGCAGACCCAGATCGAGTCCGGCGCG
ATCACGGGCTTCGAGGCGCTGCTGCGCTGGCGCCATCCCGAACGGGGCAGCATCTCCCCGGCCGTGTTCGTGCCGATCGC
CGAGGAGACCGGGGCGATCCTGGAGATCGGCGCCTGGGTGCTGCGGGAAGCCTGCCGGGCGGCGGCCGGCTGGCCGAACC
CGCTGGCGATCGCCGTCAACGTCTCGGCGGTGCAGCTCCACAACCCGCTCTTCGTCCAGTTCGTCCACGGCACCCTGTAC
GAATCCGGCCTGAAGGCGGAGCGCCTGGAGATCGAGATCACCGAGACCGCGCTGATCCGGGACCCGGCCCGGGCGCTCCT
CACCCTGCGCCAGCTCAAGGCGCTCGGCGTGCACATCGCCATGGACGATTTCGGCACCGGCTACTCGTCGCTGTCGAACC
TGCGCTCCTTCCCGTTCGACCGGATCAAGATCGACGGCTCGTTCATCAAGGCGGTCCACAGCAACCCGCAGGGAGCCGCG
ATCGTGCGCTCCGTCCTGGGGCTGGGACGCGGCCTCGGGCTCGCCGTGGTGGCGGAGGGCGTGGAGACCGCCGAGGAGCT
GTCCTTCCTGGCCGACGAGCAGTGCCACCTCGCCCAGGGCTACCTGCTGGGCCGGCCGGCACCGATCGCGCGCTTCTCGA
CCCACACCCACGGCGACGCCCGCGGCGTCCCGCCGGGGCCGGCGGCCTCGGCGGCGTGA

Upstream 100 bases:

>100_bases
TCAAACGCTGCAGATCTTCTATCGTATTTCTTGGGTAAATATTAAATTCTGCATGCCAATAGCCGTACAAATCATCAACT
ACCAATTCTCGGTTGCATAG

Downstream 100 bases:

>100_bases
GGGGGCTGCGGACCGGGGCAGGCGCTCAGTCGGTCTCCCCGCGCAGCGGCCGGGCCAGCAGGCCGGCGATCACGTCGTCG
ACGCTGGCCGTGCCGGCCAC

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MLAVVGCFVGEHNLWLVALAALVCTLASATAIELLIHAGGAGGFSRYVWLAVAAAAGGSGIWATHFLAMLAFEPGLPSGY
GVGLTLLSYVDAVAITGLGFALAASGRAIQAGLGGAVVGGGIATMHYTGMAAYQVAGHLVWNPALVVVSVALGAGLGAAA
LVVGLSATTVRGRYGGVALLILAICAHHFTGMGAVTLHPDPTVAIPTGAIRTGWLAAAVAVASCFILLLAGAALMVDLRE
RRRADLERERLRSLANAAVEGLVVCRGGEIVSANEAFARLAGLEAALLTGRSLTAYLPDLVSGTGTADQPLETELVPAGG
APIPVEVIMRPVAEYGRLPHHAVAVRDLRARRRAESEIHYLAHHDALTGLANRTSFHARLEREMRTADALGGRFAVLCLD
LDRFKEVNDLFGHAAGDAMLRDLALRVGGLLDPRQLMARLGGDEFAILTPQADGSAERLAERILATLAAVPAASGPVIAT
SIGIAVYPDDAADQRALLSHADAALYRAKNEGRGTCRRYDASMGAQIRDRRQLEHDLRHAVAKGELELVYQPQTQIESGA
ITGFEALLRWRHPERGSISPAVFVPIAEETGAILEIGAWVLREACRAAAGWPNPLAIAVNVSAVQLHNPLFVQFVHGTLY
ESGLKAERLEIEITETALIRDPARALLTLRQLKALGVHIAMDDFGTGYSSLSNLRSFPFDRIKIDGSFIKAVHSNPQGAA
IVRSVLGLGRGLGLAVVAEGVETAEELSFLADEQCHLAQGYLLGRPAPIARFSTHTHGDARGVPPGPAASAA

Sequences:

>Translated_792_residues
MLAVVGCFVGEHNLWLVALAALVCTLASATAIELLIHAGGAGGFSRYVWLAVAAAAGGSGIWATHFLAMLAFEPGLPSGY
GVGLTLLSYVDAVAITGLGFALAASGRAIQAGLGGAVVGGGIATMHYTGMAAYQVAGHLVWNPALVVVSVALGAGLGAAA
LVVGLSATTVRGRYGGVALLILAICAHHFTGMGAVTLHPDPTVAIPTGAIRTGWLAAAVAVASCFILLLAGAALMVDLRE
RRRADLERERLRSLANAAVEGLVVCRGGEIVSANEAFARLAGLEAALLTGRSLTAYLPDLVSGTGTADQPLETELVPAGG
APIPVEVIMRPVAEYGRLPHHAVAVRDLRARRRAESEIHYLAHHDALTGLANRTSFHARLEREMRTADALGGRFAVLCLD
LDRFKEVNDLFGHAAGDAMLRDLALRVGGLLDPRQLMARLGGDEFAILTPQADGSAERLAERILATLAAVPAASGPVIAT
SIGIAVYPDDAADQRALLSHADAALYRAKNEGRGTCRRYDASMGAQIRDRRQLEHDLRHAVAKGELELVYQPQTQIESGA
ITGFEALLRWRHPERGSISPAVFVPIAEETGAILEIGAWVLREACRAAAGWPNPLAIAVNVSAVQLHNPLFVQFVHGTLY
ESGLKAERLEIEITETALIRDPARALLTLRQLKALGVHIAMDDFGTGYSSLSNLRSFPFDRIKIDGSFIKAVHSNPQGAA
IVRSVLGLGRGLGLAVVAEGVETAEELSFLADEQCHLAQGYLLGRPAPIARFSTHTHGDARGVPPGPAASAA
>Mature_792_residues
MLAVVGCFVGEHNLWLVALAALVCTLASATAIELLIHAGGAGGFSRYVWLAVAAAAGGSGIWATHFLAMLAFEPGLPSGY
GVGLTLLSYVDAVAITGLGFALAASGRAIQAGLGGAVVGGGIATMHYTGMAAYQVAGHLVWNPALVVVSVALGAGLGAAA
LVVGLSATTVRGRYGGVALLILAICAHHFTGMGAVTLHPDPTVAIPTGAIRTGWLAAAVAVASCFILLLAGAALMVDLRE
RRRADLERERLRSLANAAVEGLVVCRGGEIVSANEAFARLAGLEAALLTGRSLTAYLPDLVSGTGTADQPLETELVPAGG
APIPVEVIMRPVAEYGRLPHHAVAVRDLRARRRAESEIHYLAHHDALTGLANRTSFHARLEREMRTADALGGRFAVLCLD
LDRFKEVNDLFGHAAGDAMLRDLALRVGGLLDPRQLMARLGGDEFAILTPQADGSAERLAERILATLAAVPAASGPVIAT
SIGIAVYPDDAADQRALLSHADAALYRAKNEGRGTCRRYDASMGAQIRDRRQLEHDLRHAVAKGELELVYQPQTQIESGA
ITGFEALLRWRHPERGSISPAVFVPIAEETGAILEIGAWVLREACRAAAGWPNPLAIAVNVSAVQLHNPLFVQFVHGTLY
ESGLKAERLEIEITETALIRDPARALLTLRQLKALGVHIAMDDFGTGYSSLSNLRSFPFDRIKIDGSFIKAVHSNPQGAA
IVRSVLGLGRGLGLAVVAEGVETAEELSFLADEQCHLAQGYLLGRPAPIARFSTHTHGDARGVPPGPAASAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=37.6443418013857, Blast_Score=295, Evalue=6e-81,
Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=31.8706697459584, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI226510982, Length=390, Percent_Identity=29.7435897435897, Blast_Score=171, Evalue=2e-43,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=37.7431906614786, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=36.1344537815126, Blast_Score=149, Evalue=1e-36,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=33.8345864661654, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=33.3333333333333, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=30.2521008403361, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=32.4894514767932, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI1788381, Length=205, Percent_Identity=37.0731707317073, Blast_Score=120, Evalue=5e-28,
Organism=Escherichia coli, GI1788849, Length=270, Percent_Identity=31.4814814814815, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=28.6307053941909, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI87081881, Length=261, Percent_Identity=32.183908045977, Blast_Score=113, Evalue=6e-26,
Organism=Escherichia coli, GI87082096, Length=254, Percent_Identity=28.740157480315, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=34.375, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=36.8098159509202, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1789650, Length=423, Percent_Identity=21.9858156028369, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=33.7579617834395, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=34.8387096774194, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=32.5301204819277, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=27.6073619631902, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=30.2469135802469, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=30.9090909090909, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=31.3333333333333, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1788085, Length=158, Percent_Identity=28.4810126582279, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 82922; Mature: 82922

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVVGCFVGEHNLWLVALAALVCTLASATAIELLIHAGGAGGFSRYVWLAVAAAAGGSG
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCC
IWATHFLAMLAFEPGLPSGYGVGLTLLSYVDAVAITGLGFALAASGRAIQAGLGGAVVGG
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHCC
GIATMHYTGMAAYQVAGHLVWNPALVVVSVALGAGLGAAALVVGLSATTVRGRYGGVALL
CCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCHHEECCCCCHHHHH
ILAICAHHFTGMGAVTLHPDPTVAIPTGAIRTGWLAAAVAVASCFILLLAGAALMVDLRE
HHHHHHHHHCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRADLERERLRSLANAAVEGLVVCRGGEIVSANEAFARLAGLEAALLTGRSLTAYLPDL
HHHCCHHHHHHHHHHHHHHCEEEEECCCCEEECHHHHHHHHCCHHHHHCCCCHHHHHHHH
VSGTGTADQPLETELVPAGGAPIPVEVIMRPVAEYGRLPHHAVAVRDLRARRRAESEIHY
HCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LAHHDALTGLANRTSFHARLEREMRTADALGGRFAVLCLDLDRFKEVNDLFGHAAGDAML
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHH
RDLALRVGGLLDPRQLMARLGGDEFAILTPQADGSAERLAERILATLAAVPAASGPVIAT
HHHHHHHCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
SIGIAVYPDDAADQRALLSHADAALYRAKNEGRGTCRRYDASMGAQIRDRRQLEHDLRHA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
VAKGELELVYQPQTQIESGAITGFEALLRWRHPERGSISPAVFVPIAEETGAILEIGAWV
HHCCCEEEEECCCHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
LREACRAAAGWPNPLAIAVNVSAVQLHNPLFVQFVHGTLYESGLKAERLEIEITETALIR
HHHHHHHHCCCCCCEEEEEEEEEEEECCCCEEEHHHHHHHHCCCCCEEEEEEEEHHHHHH
DPARALLTLRQLKALGVHIAMDDFGTGYSSLSNLRSFPFDRIKIDGSFIKAVHSNPQGAA
CHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCHHH
IVRSVLGLGRGLGLAVVAEGVETAEELSFLADEQCHLAQGYLLGRPAPIARFSTHTHGDA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCEECCCCCCCCCCCCCCCCCC
RGVPPGPAASAA
CCCCCCCCCCCC
>Mature Secondary Structure
MLAVVGCFVGEHNLWLVALAALVCTLASATAIELLIHAGGAGGFSRYVWLAVAAAAGGSG
CEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCC
IWATHFLAMLAFEPGLPSGYGVGLTLLSYVDAVAITGLGFALAASGRAIQAGLGGAVVGG
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHCC
GIATMHYTGMAAYQVAGHLVWNPALVVVSVALGAGLGAAALVVGLSATTVRGRYGGVALL
CCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCHHEECCCCCHHHHH
ILAICAHHFTGMGAVTLHPDPTVAIPTGAIRTGWLAAAVAVASCFILLLAGAALMVDLRE
HHHHHHHHHCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRADLERERLRSLANAAVEGLVVCRGGEIVSANEAFARLAGLEAALLTGRSLTAYLPDL
HHHCCHHHHHHHHHHHHHHCEEEEECCCCEEECHHHHHHHHCCHHHHHCCCCHHHHHHHH
VSGTGTADQPLETELVPAGGAPIPVEVIMRPVAEYGRLPHHAVAVRDLRARRRAESEIHY
HCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LAHHDALTGLANRTSFHARLEREMRTADALGGRFAVLCLDLDRFKEVNDLFGHAAGDAML
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHH
RDLALRVGGLLDPRQLMARLGGDEFAILTPQADGSAERLAERILATLAAVPAASGPVIAT
HHHHHHHCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
SIGIAVYPDDAADQRALLSHADAALYRAKNEGRGTCRRYDASMGAQIRDRRQLEHDLRHA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
VAKGELELVYQPQTQIESGAITGFEALLRWRHPERGSISPAVFVPIAEETGAILEIGAWV
HHCCCEEEEECCCHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
LREACRAAAGWPNPLAIAVNVSAVQLHNPLFVQFVHGTLYESGLKAERLEIEITETALIR
HHHHHHHHCCCCCCEEEEEEEEEEEECCCCEEEHHHHHHHHCCCCCEEEEEEEEHHHHHH
DPARALLTLRQLKALGVHIAMDDFGTGYSSLSNLRSFPFDRIKIDGSFIKAVHSNPQGAA
CHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCHHH
IVRSVLGLGRGLGLAVVAEGVETAEELSFLADEQCHLAQGYLLGRPAPIARFSTHTHGDA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCEECCCCCCCCCCCCCCCCCC
RGVPPGPAASAA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]