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The map label for this gene is ocd1 [H]

Identifier: 170747957

GI number: 170747957

Start: 1622595

End: 1623533

Strand: Reverse

Name: ocd1 [H]

Synonym: Mrad2831_1539

Alternate gene names: 170747957

Gene position: 1623533-1622595 (Counterclockwise)

Preceding gene: 170747958

Following gene: 170747956

Centisome position: 26.71

GC content: 74.33

Gene sequence:

>939_bases
ATGCGCTTCATCTCGGAGGAGGAATCGGCCTCGTTGGTCGATCACGCCATGGCGTTCGACGCCGCCCGCGAGGCGCTGAT
CGCCGCGGTGGCGCCGGGTACCACCCTGTTCCCGGCGGTGCTCGGCCACGGCTCGGAGCCGGCCAACCGGTTCTCGATCA
AGTCGGGCTCGACGGCCGACTATGCCGGGCTGAAGGTCGGCTCGTTCTGGCCCGGCAACCCGGACCGGGGCCTGCCGCGG
CACAATTCGGTGATCCTGCTGTTCGACCAGGCTGTCGGCCGGGTCGACACGGTGATCGAGGCGGGCCGCGTCAACGCCTA
CCGGACCGCCGCCGCCGACGCGGTGGCGGCGAGCGTCCTGGCGCGGCCGGATTCCGCGGTGCTCGCCGTGTTCGGGGCCG
GCAACCAGGCCGAGTTCGAGTGCGCGGCGCTCGCCCGGATCCTCCCGATCCGGACGGTGCTGGTGGTCGCCCGGGACGCC
GCCAAGGTCGCGGGGCTCAGTGAGCGCCTGGCGGGGCAGGGGGCCTCCGGGCTCGACGTGCGGGCGGCCTCTGCCCAGGA
GGCCTGCGCGGCCGCCGACGTGATCGTCACGGCGACGCCCGCCCGCGCGCCGCTGTTCGAGGCCGGCTGGGTCCGCCCCG
GCACGCATGTCGCCGCCATGGGGGCGGACGCGAAGGGCAAGCAGGAGCTGCCCCCCGCCCTGCTGGAGCGGGCGGCCCTG
TTCTGCGACCTGCCGGAGCAGTCGCGCACCATCGGCGAGTTCCAGCACGCCTCCGCGCAGGCTCAAGGCGGCCTCACGGC
GCTCGGCGACGTGCTGCGGCGCGGGGAGGGGGGCCGGACGGACCGGGACCAGATCACCGTGTTCGATTCCTCCGGCATCG
CCCTGCAGGACCTGACCATCGCCCGGGCGATCCTCGCCAAAGCCGACGCGCGCTTGTAG

Upstream 100 bases:

>100_bases
GCGCCCCGACATCGGGCTCCGCCCGAGGGCAGGGCTCTGCCCTGCACCCGCGAAAGGTCTCGGACCTTTCGAAACCATGA
TTCTGGAGGTCCGTGAACCC

Downstream 100 bases:

>100_bases
GGGAGGCCGGCGCCGGCCCTCCCCGCCCCGGCGGAGGACGGCATGCAGGACAGGCAGATCCGGGTCATCGGCATCGGCAC
GGGCGATCCCGAGCACCTGA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 1 [H]

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MRFISEEESASLVDHAMAFDAAREALIAAVAPGTTLFPAVLGHGSEPANRFSIKSGSTADYAGLKVGSFWPGNPDRGLPR
HNSVILLFDQAVGRVDTVIEAGRVNAYRTAAADAVAASVLARPDSAVLAVFGAGNQAEFECAALARILPIRTVLVVARDA
AKVAGLSERLAGQGASGLDVRAASAQEACAAADVIVTATPARAPLFEAGWVRPGTHVAAMGADAKGKQELPPALLERAAL
FCDLPEQSRTIGEFQHASAQAQGGLTALGDVLRRGEGGRTDRDQITVFDSSGIALQDLTIARAILAKADARL

Sequences:

>Translated_312_residues
MRFISEEESASLVDHAMAFDAAREALIAAVAPGTTLFPAVLGHGSEPANRFSIKSGSTADYAGLKVGSFWPGNPDRGLPR
HNSVILLFDQAVGRVDTVIEAGRVNAYRTAAADAVAASVLARPDSAVLAVFGAGNQAEFECAALARILPIRTVLVVARDA
AKVAGLSERLAGQGASGLDVRAASAQEACAAADVIVTATPARAPLFEAGWVRPGTHVAAMGADAKGKQELPPALLERAAL
FCDLPEQSRTIGEFQHASAQAQGGLTALGDVLRRGEGGRTDRDQITVFDSSGIALQDLTIARAILAKADARL
>Mature_312_residues
MRFISEEESASLVDHAMAFDAAREALIAAVAPGTTLFPAVLGHGSEPANRFSIKSGSTADYAGLKVGSFWPGNPDRGLPR
HNSVILLFDQAVGRVDTVIEAGRVNAYRTAAADAVAASVLARPDSAVLAVFGAGNQAEFECAALARILPIRTVLVVARDA
AKVAGLSERLAGQGASGLDVRAASAQEACAAADVIVTATPARAPLFEAGWVRPGTHVAAMGADAKGKQELPPALLERAAL
FCDLPEQSRTIGEFQHASAQAQGGLTALGDVLRRGEGGRTDRDQITVFDSSGIALQDLTIARAILAKADARL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=236, Percent_Identity=31.3559322033898, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI62241008, Length=236, Percent_Identity=31.3559322033898, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24642678, Length=313, Percent_Identity=25.5591054313099, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014334
- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 32243; Mature: 32243

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFISEEESASLVDHAMAFDAAREALIAAVAPGTTLFPAVLGHGSEPANRFSIKSGSTAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCC
YAGLKVGSFWPGNPDRGLPRHNSVILLFDQAVGRVDTVIEAGRVNAYRTAAADAVAASVL
CCCEEECCCCCCCCCCCCCCCCCEEEEECCHHCHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARPDSAVLAVFGAGNQAEFECAALARILPIRTVLVVARDAAKVAGLSERLAGQGASGLDV
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
RAASAQEACAAADVIVTATPARAPLFEAGWVRPGTHVAAMGADAKGKQELPPALLERAAL
ECCCHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
FCDLPEQSRTIGEFQHASAQAQGGLTALGDVLRRGEGGRTDRDQITVFDSSGIALQDLTI
HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEHHHHH
ARAILAKADARL
HHHHHHHHCCCC
>Mature Secondary Structure
MRFISEEESASLVDHAMAFDAAREALIAAVAPGTTLFPAVLGHGSEPANRFSIKSGSTAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCC
YAGLKVGSFWPGNPDRGLPRHNSVILLFDQAVGRVDTVIEAGRVNAYRTAAADAVAASVL
CCCEEECCCCCCCCCCCCCCCCCEEEEECCHHCHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARPDSAVLAVFGAGNQAEFECAALARILPIRTVLVVARDAAKVAGLSERLAGQGASGLDV
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
RAASAQEACAAADVIVTATPARAPLFEAGWVRPGTHVAAMGADAKGKQELPPALLERAAL
ECCCHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
FCDLPEQSRTIGEFQHASAQAQGGLTALGDVLRRGEGGRTDRDQITVFDSSGIALQDLTI
HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEHHHHH
ARAILAKADARL
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]