Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 170747670

GI number: 170747670

Start: 1310706

End: 1311434

Strand: Reverse

Name: ydhC [H]

Synonym: Mrad2831_1245

Alternate gene names: 170747670

Gene position: 1311434-1310706 (Counterclockwise)

Preceding gene: 170747680

Following gene: 170747665

Centisome position: 21.58

GC content: 75.72

Gene sequence:

>729_bases
ATGGACGTGGTGGCACGCCGCCGGGGCCGGCCCCGCAAGGCCCTGGTCGTCCCGGCCGCGCAGGTGCCGCGGACCGCGCT
GCACGCGCAGGCGGCGGCCCGGCTCAAGGACATGATCGTGCGCGGCGCGCTGCCGGCCGGCGCGACCCTGGTGGAGACGG
ACCTCTCCGCGGCGCTCGGGATCTCCCGGACCCCGCTGCGGGAAGCCCTCAAGCTCCTGGCGGCGGAGGGGCTGGTCGAG
CTGCACCAGAACCGCAGCGCGCGCGTCCCGGACTGGACGCCGGAGGAGATCCTCGAACTGTTCGAGGCGCTCGCCGGGAT
CGAGCGGCTGACCGCCGAACTCGCGGCGCCGCGGATCTCCGAAGATCTGATGGACCAGCTGCGCGGCAAGCAGGCGCAGC
TCGACCGGATGCACCGGGACCAAGTGCTCGACGCCTATTTCGCCCTGAACCAGGAGATCCACCGGACGATCGTCACGGCC
GCCCGGAACCGCCCGCTGGCGGAGGCCCACGCGGCGCTCCAGGCCCGGGCCCAGTGGGCCCGCCTGCGCGCGCTCTCCAG
CGGCAGCCGCTGGGAGGAATCGGCGCGCGAGCACCGGGACCTGTTCGAGGCCCTCGCCGCGCGGGACGCCGCCGCGGCCG
GATCCGTCGCCCATCGCCACGTCCTGCGGACCGGCGTGGTGATCGCCGAGACGCTCCAGGCGCGGCGCGCGGACCCCGCG
GCCCGGTAA

Upstream 100 bases:

>100_bases
TTTGCGCAACTGCATGATATGTCAGCGCAACAGGCTGAAAAATGGAACACCGATCGGGTGGCCGGACGCGCTAGGCTGGC
GCGGTGGAACGGGAGGATCG

Downstream 100 bases:

>100_bases
CGAAGCGTTAACCCTGTCGCCGCATCGGTGGGTCACCAGCCGGACGCTGGCCTTCCACGCCCATCCGATCCGCCCCTCAA
CACGGGTGGGCGTGGAAGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDVVARRRGRPRKALVVPAAQVPRTALHAQAAARLKDMIVRGALPAGATLVETDLSAALGISRTPLREALKLLAAEGLVE
LHQNRSARVPDWTPEEILELFEALAGIERLTAELAAPRISEDLMDQLRGKQAQLDRMHRDQVLDAYFALNQEIHRTIVTA
ARNRPLAEAHAALQARAQWARLRALSSGSRWEESAREHRDLFEALAARDAAAAGSVAHRHVLRTGVVIAETLQARRADPA
AR

Sequences:

>Translated_242_residues
MDVVARRRGRPRKALVVPAAQVPRTALHAQAAARLKDMIVRGALPAGATLVETDLSAALGISRTPLREALKLLAAEGLVE
LHQNRSARVPDWTPEEILELFEALAGIERLTAELAAPRISEDLMDQLRGKQAQLDRMHRDQVLDAYFALNQEIHRTIVTA
ARNRPLAEAHAALQARAQWARLRALSSGSRWEESAREHRDLFEALAARDAAAAGSVAHRHVLRTGVVIAETLQARRADPA
AR
>Mature_242_residues
MDVVARRRGRPRKALVVPAAQVPRTALHAQAAARLKDMIVRGALPAGATLVETDLSAALGISRTPLREALKLLAAEGLVE
LHQNRSARVPDWTPEEILELFEALAGIERLTAELAAPRISEDLMDQLRGKQAQLDRMHRDQVLDAYFALNQEIHRTIVTA
ARNRPLAEAHAALQARAQWARLRALSSGSRWEESAREHRDLFEALAARDAAAAGSVAHRHVLRTGVVIAETLQARRADPA
AR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26562; Mature: 26562

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVARRRGRPRKALVVPAAQVPRTALHAQAAARLKDMIVRGALPAGATLVETDLSAALG
CCCCHHHCCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
ISRTPLREALKLLAAEGLVELHQNRSARVPDWTPEEILELFEALAGIERLTAELAAPRIS
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
EDLMDQLRGKQAQLDRMHRDQVLDAYFALNQEIHRTIVTAARNRPLAEAHAALQARAQWA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RLRALSSGSRWEESAREHRDLFEALAARDAAAAGSVAHRHVLRTGVVIAETLQARRADPA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AR
CC
>Mature Secondary Structure
MDVVARRRGRPRKALVVPAAQVPRTALHAQAAARLKDMIVRGALPAGATLVETDLSAALG
CCCCHHHCCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
ISRTPLREALKLLAAEGLVELHQNRSARVPDWTPEEILELFEALAGIERLTAELAAPRIS
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
EDLMDQLRGKQAQLDRMHRDQVLDAYFALNQEIHRTIVTAARNRPLAEAHAALQARAQWA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RLRALSSGSRWEESAREHRDLFEALAARDAAAAGSVAHRHVLRTGVVIAETLQARRADPA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]