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The map label for this gene is rpoE [H]

Identifier: 170747465

GI number: 170747465

Start: 1087218

End: 1087958

Strand: Reverse

Name: rpoE [H]

Synonym: Mrad2831_1033

Alternate gene names: 170747465

Gene position: 1087958-1087218 (Counterclockwise)

Preceding gene: 170747466

Following gene: 170747464

Centisome position: 17.9

GC content: 70.85

Gene sequence:

>741_bases
ATGACCCGCGACGACACCGACACCGTCCTGTCCCAGGAGGACGGGACTCGGGATGGCCGCCCGAACCTGGCGCCCGGCAT
CCGCACGCATCTCGGTGAGCACCTGCGCACGGTCTACGAGCGGATCGGCGAGGAGACGATGCCGTCCCGCTTCGCCGAGC
TGATCGAGAAGCTCGAGGCGGCCCTGCGTGCCCGCGGCGAGGCGATCGAGCCGGAATTCCGCAACGGTCTGCTCGCGGCC
GTGCCGTCGCTGCGCGCCTTCGCGCTGTCGCTGACCTCGAACCCGGCCCGCTCGGACGACCTCGTGCAGGACACCCTGCT
GAAGGGCTGGCAGCACCGCGCGCGCTTCCAGCCGGGCACCAACCTGAACGCGTGGCTGTTCACGATCCTGCGCAACATCT
TCTACTCGGACCATCGCAAGCGGGTCCGCGAGGTCGAGGATCAGGACGGATCCTACGCGGCCCGGCTCGCCACCGCCCCG
CACCAGGGCGACCGGCTCGACGTCGAGGACCTGCAATCGGCGCTCGCGAAGCTGCCGCCGGACCAGCGCGAGGCGCTGGT
GCTGGTCGGTGCCGAGGGCGTCTCCTACGAGGAGGCCGCGACCATCATGGGCTGCAAGGTCGGCACCGTGAAGAGCCGCG
TCAGCCGCGCCCGCGGCCGACTCGCCGAGCTCCTGGGCTACGACGAGGAGGACCTCGGCTCCGACCGGTTCATCCAGTCG
GCGATGCCGAAGGACGCGTAG

Upstream 100 bases:

>100_bases
ATCGGCCGGACTTCCGCACCGGGTCGAGCCGGCAAGCGCCCCACCTCGACCCGCTCCGGACCACAGGTCGAGCCACGATG
AGTTGACGAGCGCGATACGC

Downstream 100 bases:

>100_bases
GCGCCCGGCTCGAACCGGGCCGGAAGTCCACAAAAAAAGATGCATCCGATTCCGGGGATCGGGCGTTACCGGCCCGAGCT
TCGCTGCGCCAGCGCGGCGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTRDDTDTVLSQEDGTRDGRPNLAPGIRTHLGEHLRTVYERIGEETMPSRFAELIEKLEAALRARGEAIEPEFRNGLLAA
VPSLRAFALSLTSNPARSDDLVQDTLLKGWQHRARFQPGTNLNAWLFTILRNIFYSDHRKRVREVEDQDGSYAARLATAP
HQGDRLDVEDLQSALAKLPPDQREALVLVGAEGVSYEEAATIMGCKVGTVKSRVSRARGRLAELLGYDEEDLGSDRFIQS
AMPKDA

Sequences:

>Translated_246_residues
MTRDDTDTVLSQEDGTRDGRPNLAPGIRTHLGEHLRTVYERIGEETMPSRFAELIEKLEAALRARGEAIEPEFRNGLLAA
VPSLRAFALSLTSNPARSDDLVQDTLLKGWQHRARFQPGTNLNAWLFTILRNIFYSDHRKRVREVEDQDGSYAARLATAP
HQGDRLDVEDLQSALAKLPPDQREALVLVGAEGVSYEEAATIMGCKVGTVKSRVSRARGRLAELLGYDEEDLGSDRFIQS
AMPKDA
>Mature_245_residues
TRDDTDTVLSQEDGTRDGRPNLAPGIRTHLGEHLRTVYERIGEETMPSRFAELIEKLEAALRARGEAIEPEFRNGLLAAV
PSLRAFALSLTSNPARSDDLVQDTLLKGWQHRARFQPGTNLNAWLFTILRNIFYSDHRKRVREVEDQDGSYAARLATAPH
QGDRLDVEDLQSALAKLPPDQREALVLVGAEGVSYEEAATIMGCKVGTVKSRVSRARGRLAELLGYDEEDLGSDRFIQSA
MPKDA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 27369; Mature: 27238

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRDDTDTVLSQEDGTRDGRPNLAPGIRTHLGEHLRTVYERIGEETMPSRFAELIEKLEA
CCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALRARGEAIEPEFRNGLLAAVPSLRAFALSLTSNPARSDDLVQDTLLKGWQHRARFQPGT
HHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
NLNAWLFTILRNIFYSDHRKRVREVEDQDGSYAARLATAPHQGDRLDVEDLQSALAKLPP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
DQREALVLVGAEGVSYEEAATIMGCKVGTVKSRVSRARGRLAELLGYDEEDLGSDRFIQS
CCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
AMPKDA
CCCCCC
>Mature Secondary Structure 
TRDDTDTVLSQEDGTRDGRPNLAPGIRTHLGEHLRTVYERIGEETMPSRFAELIEKLEA
CCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALRARGEAIEPEFRNGLLAAVPSLRAFALSLTSNPARSDDLVQDTLLKGWQHRARFQPGT
HHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
NLNAWLFTILRNIFYSDHRKRVREVEDQDGSYAARLATAPHQGDRLDVEDLQSALAKLPP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
DQREALVLVGAEGVSYEEAATIMGCKVGTVKSRVSRARGRLAELLGYDEEDLGSDRFIQS
CCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
AMPKDA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]