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The map label for this gene is rbfA

Identifier: 170762143

GI number: 170762143

Start: 368319

End: 368669

Strand: Direct

Name: rbfA

Synonym: UPA3_0336

Alternate gene names: 170762143

Gene position: 368319-368669 (Clockwise)

Preceding gene: 170762062

Following gene: 170762207

Centisome position: 49.0

GC content: 29.06

Gene sequence:

>351_bases
ATGGCAAACGAAGTTCGAGTTGCAAGGTTAGAATCTTTAATTAAAGATGTTATTAATAATGCGTTAGCGAATGAAATTAA
TGATAAAATTGCAAAATTAGCACGTGTAACTGCAGTGCGTTTAAGTAATGATTTATCAGTAGCAAAGATTTTTTTAGACG
CTCATAAACGCGAAAGTATGCTTAAAGTTTTAGAAAATGTTAATAAAGTTAGTGGCTTATTGCGTTCAAAATTAGCTGCG
GAATGAACTAGTTATAAAGTACCGGAATTGCGCTTTGTAATCGATGAAACTATTGATTATGCTAATCATATTGATGAATT
ATTTAAAAAAATTAAACAACAAGAAAATTAA

Upstream 100 bases:

>100_bases
GGATTAACAATTGCAAACTTTAATGATATTAAAGAGAACGATATTATTGAAGTTTATATTAAAGTTGAAAAGAAACATGA
TGAGGTTAAATAAATAAAAT

Downstream 100 bases:

>100_bases
TTATCCAATGTTAAAAAAACAAAATAAAAATAAAGAACAACACTGATTAGAAAAACATTTACGACAAAAAACAGGTTTGA
TTATTTCTTGATCAATTATT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MANEVRVARLESLIKDVINNALANEINDKIAKLARVTAVRLSNDLSVAKIFLDAHKRESMLKVLENVNKVSGLLRSKLAA
EWTSYKVPELRFVIDETIDYANHIDELFKKIKQQEN

Sequences:

>Translated_116_residues
MANEVRVARLESLIKDVINNALANEINDKIAKLARVTAVRLSNDLSVAKIFLDAHKRESMLKVLENVNKVSGLLRSKLAA
E*TSYKVPELRFVIDETIDYANHIDELFKKIKQQEN
>Mature_115_residues
ANEVRVARLESLIKDVINNALANEINDKIAKLARVTAVRLSNDLSVAKIFLDAHKRESMLKVLENVNKVSGLLRSKLAAE
*TSYKVPELRFVIDETIDYANHIDELFKKIKQQEN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13043; Mature: 12912

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANEVRVARLESLIKDVINNALANEINDKIAKLARVTAVRLSNDLSVAKIFLDAHKRESM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LKVLENVNKVSGLLRSKLAAETSYKVPELRFVIDETIDYANHIDELFKKIKQQEN
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANEVRVARLESLIKDVINNALANEINDKIAKLARVTAVRLSNDLSVAKIFLDAHKRESM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LKVLENVNKVSGLLRSKLAAETSYKVPELRFVIDETIDYANHIDELFKKIKQQEN
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA